Gene detail

Gene detail information of Glyur000345s00015678

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03490.1	1.00E-74	peroxin 19-1
NR	KHN09820.1	1.01E-133	Peroxisome biogenesis protein 19-2 [Glycine soja]
Swissprot	tr\|Q9SRQ3\|PE191_ARATH	3.00E-100	Peroxisome biogenesis protein 19-1 (Precursor)
trEMBL	tr\|I1MV13\|I1MV13_SOYBN	4.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G15080.1}

Sequence

Transcript Sequence

>Glyur000345s00015678.1
TATTTTGGNGTGGGAAAAAATGCAATAATTGGAAATAGATGAGAAGTGAAAGAGAGAGAGAGGATTGCATTGGGGTCGCTCGTTTATTCCAATTCCAAGAGCAGCAAGGAGTTTGGTAGGCGGTGACAACCATGGCCGACCCCTCTGATGACCTCGACCAACTCCTCGACAGTGCTTTGGATGATTTCCAGACCCTCAACCTCAATTCTTCCCTTCCAAGAAGCGGGGAACCAGCTGCTACGAACAAAAAGGAGTCTCCTTCTTCGTTGCCGTCAGGGGTTCAGGGACTGGGCATGGGGCTACCCGATTTGAGAACGAAGAAGAAGGGGAAACAGAAGGTTTCAAAAGATGCACATGTCTCGGAGGCCCTCAACAAGCTCAGGGAGCAGACCAGAGAGGCTGTTAAGGGCCTCGAGTTCATGTCCCAACCCGCTGTGGGGGATGGTGATTTGGGTAAGGATGCCATGATGGAGGATTGGGACATGGAATCTATGGTGGAGACCATGATGCAGCAACTTCTGTCCAAGGAGATTCTTCATGAACCAATGAAGGAAATAGGAGAAAGATATCCAAAGTGGTTGGAAGAGCATAAAACCAGCTTAAGCAAAGAAGATTATGACCGGTATTCACACCAATTCGAACTGATACGGAATCTTAATGAAGTTTATGAAAATGATCCTGGAAACTTCAACAAGATTGTTGAGCTCATGCAGAAAATGCAGGAATGTGGACAACCTCCAAATGATATTGTCCACGAGCTGGCTCCCGATTTCGATTTAGCCAGCCTTGGCCAGTTATCTCCAGAAATGCTTGACTCTCAGACAAATTGTTGTATAATGTGAAGCTATTTCCTCCCTCTTATCACGTGGCAGCTGCTGGTTTGCAGATTAATAGGAACATTTATTTTTCACTTNTCAGAATAAAATAGTTTTATGCGTTACGACTGTTCTTTTCCTACTTACTAAGGTTACAAGGAACTCTCACTTTTATAGCCTCCCTTCAAGGTTGTATATGATGAGGATTTGTCCATTCACATTTTCTGAGAGCAATGATAATACGAGTTGCTAGTTGCAAACAAAATTTGCTTTCCGATTCTTTGAGAATCATTTCCCATTTAATCTCGAGATCCTTGAATTTGATACCCTTTATGCTTCATGATGAGTTATTTGCAAGACTGATGAAAAGCACCTTTTGATGACCAAAAGGCGCAAGCATTGTAAAGTAAGACTGGCTGTACTTGATGTGTGTTGGATCGTTGAAGTATTTTTAAGTAAAATGCCACAACCAGTCTTGTTTATAAAGCACTTTTCATTAAATGATGCCTTATTCTCTTTTGACGCTAAGAGAGTATTGTGTGNAGGCACACCATAAGTCAGTCATTACAGTAAACCCAGCTCCAAGGCAAACACCATCAGAAATCCTTGTTATTACATCATATTTAGAAAAGAATACTTATTCTGGACCAAAGAAAAAAGAGAAGAATACTTACACTGTCAGAATTGTGAATTATGAGTTTATTGCATTTAAACGGATCAAATTATGAATTTCCTATGGTTTAACAAAACAAAAAGAGGATATAATGACAGCAGTAACCTTGGATAGATTGTAGCTATGATCTATGGAACTTATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	185137	188997	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005777 peroxisome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015678.1	PF04614.7	Pex19	71	236	3.60E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.885
SRR1783600	control	51.020
SRR1783602	moderate drought stress	69.933
SRR1811619	moderate drought stress	69.402

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.763
DRR006520	Root Summer glycyrrhizin high producing strain	52.888
DRR006521	Root Winter glycyrrhizin high producing strain	115.373
DRR006522	Root Winter glycyrrhizin high producing strain	112.257
DRR006523	Root Summer glycyrrhizin low producing strain	54.839
DRR006524	Root Summer glycyrrhizin low producing strain	54.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.573
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.452

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.379
SRR2868004	Drought Stress (root)	47.823
SRR2967015	Control (root)	54.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.676
SRR9715740	Leaf	65.662
SRR9715741	Leaf	56.094
SRR9715739	Root	33.655
SRR9715742	Root	38.924
SRR9715743	Root	37.526

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.020
SRR8749028	MeJA induced 9h	33.480
SRR8749029	MeJA induced 9h	31.458
SRR8749030	Uninduced	61.197
SRR8749031	Uninduced	36.617
SRR8749032	Uninduced	49.931

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.534
SRR8400027	Control - Root	67.451