Gene detail information of Glyur000345s00015677.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17300.10Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NRXP_004508904.10PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum]
COGYP_007345.10asparaginyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|O48593|SYNO_ARATH0Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|G7JIW4|G7JIW4_MEDTR0Asparagine-tRNA ligase {ECO:0000313|EMBL:AES90907.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00345175468182682-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01893NARS, asnSEC:6.1.1.22Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006421  asparaginyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004816  asparagine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000345s00015677.1PF01336.20tRNA_anti-codon961734.00E-08
Glyur000345s00015677.1PF00152.15tRNA-synt_21905351.40E-59


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.127
SRR1783600control15.092
SRR1783602moderate drought stress17.900
SRR1811619moderate drought stress17.635

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.403
DRR006520Root Summer glycyrrhizin high producing strain11.673
DRR006521Root Winter glycyrrhizin high producing strain17.221
DRR006522Root Winter glycyrrhizin high producing strain16.783
DRR006523Root Summer glycyrrhizin low producing strain15.016
DRR006524Root Summer glycyrrhizin low producing strain15.340
DRR006525Leaf Summer glycyrrhizin high producing strain24.108
DRR006526Leaf Summer glycyrrhizin high producing strain23.752

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)23.210
SRR2868004Drought Stress (root)22.985
SRR2967015Control (root)28.050

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf20.821
SRR9715740Leaf25.185
SRR9715741Leaf22.108
SRR9715739Root4.308
SRR9715742Root7.855
SRR9715743Root7.469

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.554
SRR8749028MeJA induced 9h16.639
SRR8749029MeJA induced 9h15.466
SRR8749030Uninduced9.999
SRR8749031Uninduced6.812
SRR8749032Uninduced8.922

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root27.772
SRR8400027Control - Root24.012

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved