Gene detail information of Glyur000345s00015676 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56670.1 | 6.00E-12 | Ribosomal protein S30 family protein |
| NR | XP_003608708.1 | 1.05E-21 | 40S ribosomal protein S30 [Medicago truncatula] |
| Swissprot | tr|P49689|RS30_ARATH | 8.00E-16 | 40S ribosomal protein S30 |
| trEMBL | tr|G7JW33|G7JW33_MEDTR | 4.00E-22 | 40S ribosomal S30-like protein {ECO:0000313|EMBL:AES94266.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00345 | 171871 | 173351 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000345s00015676.1 | PF04758.9 | Ribosomal_S30 | 3 | 45 | 2.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 44.127 |
| SRR1783600 | control | 49.498 |
| SRR1783602 | moderate drought stress | 46.925 |
| SRR1811619 | moderate drought stress | 51.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 216.149 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 232.343 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 151.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 154.784 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 153.904 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 169.157 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 73.524 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 429.985 |
| SRR2868004 | Drought Stress (root) | 219.138 |
| SRR2967015 | Control (root) | 160.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.405 |
| SRR9715740 | Leaf | 90.646 |
| SRR9715741 | Leaf | 70.246 |
| SRR9715739 | Root | 51.453 |
| SRR9715742 | Root | 66.361 |
| SRR9715743 | Root | 55.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 203.734 |
| SRR8749028 | MeJA induced 9h | 48.549 |
| SRR8749029 | MeJA induced 9h | 118.867 |
| SRR8749030 | Uninduced | 20.539 |
| SRR8749031 | Uninduced | 8.441 |
| SRR8749032 | Uninduced | 13.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 287.990 |
| SRR8400027 | Control - Root | 240.465 |