Gene detail

Gene detail information of Glyur000345s00015673.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60580.1	9.00E-24	C2H2-like zinc finger protein
NR	XP_003608704.1	4.13E-124	hypothetical protein MTR_4g100860 [Medicago truncatula]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	3.00E-49	Zinc finger protein ZAT9
trEMBL	tr\|G7JIV8\|G7JIV8_MEDTR	2.00E-124	C2H2-type zinc-finger protein, putative {ECO:0000313\|EMBL:AES90901.1}

Sequence

Transcript Sequence

>Glyur000345s00015673.1
ATGGAAAGGCACAAATGCAAGCTATGTTCAAGGACATTTGCCAATGGCAGAGCCCTCGGTGGACACATGAAGGCTCACCTTGCCACACTGCCACTTCCTCCCAAGCCCCAACCACCACCATTCACCGACTCTGCTACTTCCCTCTCATATTCCTCTTCATCGGAATCAGAACAAGAATACCAAGTGGCACAGGCACAGAGAGAATCAGATGAAAAAGCTCTGATTTACGGGTTGAGAGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAGTTCTCTTTCGCACCACCCGATACTGGTTCCTCTGTGGTGCTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGCGGAACCGCAAGTCCAGCGTGGCGGTGGTTGTGGTGGGTGGCGGCCAGAATAACAACAACCAGAAGAAGCCGAAGCTGGGTTTCANGGTTTCAACGCCACCACCCACCACCGAACCCGAACCTGTTAGCTCTGTTTCCGACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTCTCCAGAGACAGGTGGTGGAGGAGAAGGAACAACAATGTGGTGGTTAAACAAGAAGAAGAAGGGTGTGAGGGATCGGTGGAGATCAAGAACAAGGTGATGAAGTTGAAGAGAGTTCGTGGGAAGCACGTGTGTGACAATTGTGGGAAATCGTTTCGATCTTCTCGAGCGTTGGGGAGTCACAGGAGTATATGTTGTCGTGACGAAGCTGATAAAGGGAATAATAATAATAATAGCAATGAGAAGAAGAAGATTTTCGAATGCCCCTTTTGTTTTAAGGTGTTTGGGTCAGGACAAGCACTTGGTGGACACAAGAGATCTCACCTCATCCCANCTTCATCTTCCAACACCGTCGCTAATAACAACAACGATTCTGCTGCAGCTACTAGATTGATGAAAGAGAGCTTCATAGATCTCAATTTGCCTGCTCCACCTGAAGAAGATGACCTCAGTGTTGTTTCTGATGCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	147361	148383	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015673.1	PF13912.1	zf-C2H2_6	4	26	3.10E-06
Glyur000345s00015673.1	PF13912.1	zf-C2H2_6	227	246	0.00031
Glyur000345s00015673.1	PF13912.1	zf-C2H2_6	269	292	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.810
SRR1783600	control	0.870
SRR1783602	moderate drought stress	1.033
SRR1811619	moderate drought stress	0.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.113
DRR006520	Root Summer glycyrrhizin high producing strain	4.005
DRR006521	Root Winter glycyrrhizin high producing strain	1.309
DRR006522	Root Winter glycyrrhizin high producing strain	1.112
DRR006523	Root Summer glycyrrhizin low producing strain	4.152
DRR006524	Root Summer glycyrrhizin low producing strain	4.464
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.219
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.056

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.672
SRR2868004	Drought Stress (root)	7.527
SRR2967015	Control (root)	8.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.354
SRR9715740	Leaf	2.250
SRR9715741	Leaf	16.948
SRR9715739	Root	2.161
SRR9715742	Root	2.411
SRR9715743	Root	1.745

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.235
SRR8749028	MeJA induced 9h	22.101
SRR8749029	MeJA induced 9h	26.362
SRR8749030	Uninduced	10.998
SRR8749031	Uninduced	1.054
SRR8749032	Uninduced	1.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.435
SRR8400027	Control - Root	8.705