Gene detail

Gene detail information of Glyur000345s00015669

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47470.1	1.00E-77	Nodulin MtN21 /EamA-like transporter family protein
NR	XP_003608703.1	2.23E-151	Auxin-induced protein 5NG4 [Medicago truncatula]
Swissprot	tr\|Q9FGL0\|WTR44_ARATH	2.00E-104	WAT1-related protein At5g47470
trEMBL	tr\|G7JIV7\|G7JIV7_MEDTR	7.00E-150	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:AES90900.2}

Sequence

Transcript Sequence

>Glyur000345s00015669.1
AAAAGTGAACAATCTGAGTCAAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGGTAGGTAACGTATTGAGCAGCAGGTATCCCAAAACTGAAATATAGAGAAGAAGGATCCCCCTTCAATTCAAGGGAGGAAGCGGTGGAAATAAGACTGGTAGAAAAAACATGAACGGCAGTTCACTTCTGACTCNGATTTCGCACATGAGTCATTAATAAATGCAATTCTTTTTGTTGAAAGCAATTAATAAATGCCATAGAGAGAATTGAAATTGGAAAGGACACAAGGAAGCACAAGAGAATGAAGAGAGGATATATATCAATCCTCTCTTGATTTTTGTTTAAGAAGAAGGGTATTGATTGAAGATGGTGGGGACGATGAATGGTGGAATGATGGAAGATGTGGCCATAATTGGGGGGTTGATAGGGGTGCAGNTTATTTACGCAGGGAATGCGGTGCTGATGAGTTATCTCATGTCTCTCGGCCTCACCTCTCTCACCATTGTCATTTTCACTTCCTTTGCTACATTCCTTATTCTCCTCCCCTTTGCCTTTTATTATGAAAGGAGTAAATGGCCCAAGAAACTCAGTTTGAAGTTGCTTATACAGTTTCTGCTCCTTGCGCTTGGAGGTGTAACATTGGTCCAGTCTTTATTCCTTAAAGGAATCAGTCAAACCTCGCCAGCAATGGGAACAGCCATGCCAAACCTTGCTCCAGGGGCATTCACAATGAGCATAATGCAAAGCATCTCTACTCCTGTGCCTGTTACAGATGGAACAGCTCAACTATCATCACCAACACCAGTTGTAATGTTTGACAGAGACAAGTTAATCGGTTGCCTCTATCTGTTAGCTGCTGTCCTCATTTTGTCAAGCACCGTTGTCTTGCAGGCTTTTACTTTAGGANAATTTCCTGCACCCATTTCCTTGTGTGCAATAACATCCTTTTTCGGGGGGTTCATGACTACAACAGCTCAATTAATTGAAGATCATGAATTCAAAACTGGTTGGCCGCTAGCAGGTGCAGTGAGTGGAATATGCATAAGTTTCAATGGTTGGGCACTTGAGAAGAGAGGGCCAGTCTTGGTCTCGGTGTTCAGCCCCATTGCCACAGTATGCTCTGTCATTTTCTCGGTCATTACTCTAGGAGACACCATTAATATTGGAAGCCTTGCGGGTATGTTCCTCATGTTCACTGGGCTCTACTTCGTGCTTTGGGCCAAAGGGAAAGAAGGTGGCTTAGAGAGTACGGCACGAGTGGACCAACATAGTAGCTGAGGTACAACACAACTTTTTNATTTTCTCCGGCATAGCACAAATAAATTTGAGGGAGAGAAGAAGAAAAAAATGGCGGAAGAGGGTTTGAGGGAGAGAATGGGACTCAAGGAAAAGAATTATCAAGAAAAAGGGGGAAAAAAGTATAACATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	131656	135734	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015669.1	PF00892.15	EamA	25	117	2.00E-05
Glyur000345s00015669.1	PF00892.15	EamA	184	283	1.20E-05
Glyur000345s00015669.2	PF00892.15	EamA	25	117	2.00E-05
Glyur000345s00015669.2	PF00892.15	EamA	184	283	1.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.838
SRR1783600	control	0.961
SRR1783602	moderate drought stress	0.976
SRR1811619	moderate drought stress	1.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.290
DRR006520	Root Summer glycyrrhizin high producing strain	0.266
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.038
DRR006524	Root Summer glycyrrhizin low producing strain	0.994
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.844

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.187
SRR2868004	Drought Stress (root)	1.498
SRR2967015	Control (root)	2.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.463
SRR9715740	Leaf	4.197
SRR9715741	Leaf	2.883
SRR9715739	Root	1.315
SRR9715742	Root	1.161
SRR9715743	Root	0.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.098
SRR8749028	MeJA induced 9h	0.401
SRR8749029	MeJA induced 9h	0.188
SRR8749030	Uninduced	0.977
SRR8749031	Uninduced	0.209
SRR8749032	Uninduced	0.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.044
SRR8400027	Control - Root	4.053