Gene detail

Gene detail information of Glyur000345s00015661

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47435.2	3.00E-139	formyltetrahydrofolate deformylase, putative
NR	XP_007155675.1	0	hypothetical protein PHAVU_003G221600g [Phaseolus vulgaris]
COG	NP_214247.1	1.00E-72	formyltetrahydrofolate deformylase [Aquifex aeolicus VF5]
Swissprot	tr\|Q93YQ3\|PURU1_ARATH	2.00E-174	Formyltetrahydrofolate deformylase 1, mitochondrial (Precursor)
trEMBL	tr\|V7CC20\|V7CC20_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27669.1}

Sequence

Transcript Sequence

>Glyur000345s00015661.1
AAAAATCTGTATACAAACAAAACGGCGTATGGTGGGAATCCTGAAATGATAGGGNGTCGGAGTAGGAGAGATAGAGAGGGCGGTGTTGGTTCCACACGAAGTAGCAGGTTGAGGTAGGTGGTTGAATTTAAGCGTTGCACTTTAGAGAGAGAGAATGGGGATGGTGAGAAGAGTCTCCCAAGTTCTGGGATTGGCCAACAGGAGCAGGAACAGGAACATCTCCTTCAAATCTCTGGATCCCCCATCACCATCATGTTCCTCCCTCACCCATGGAATCCACCTCTTTCATTGCCCTGATGCGGTTGGAATTGTTGCCAAGCTATCGGAATGCATTGCCTCTAGAGGTGGAAACATCCTCGCTGCTGATGTTTTTGTACCTGAGAATAAACAAGTCTTCTACTCTAGAAGTGATTTTGTTTTTGATCCTGTTAAATGGCCACGGGTGCAGATGGAGGAGNATTTCCTAAAACTTTCACAGGCATTCAATGCCATGCGATCTGTCGTACGAGTGCCAGCTCTGGATCCTAAATATAAGATAGCTGTTCTTGTATCAAAGCAGGACCACTGCTTGGTTGATTTATTACATGGATGGCAGGATGGAAGATTTCCGGTGGATATCACTTGTGTAATTAGTAACCATCATAGAGCTTCAAACACCCATGTGATCCGTTTTCTTGAAAGGCATGGTATCCCATATCATTATTTAAGCACAACCAAAGATGATAAAAGAGAAGGGGAGATATTGGAGCTGGTTCAGAATACTGATTTTTTAGTACTTGCGAGATATATGCAGATATTATCCGGAAACTTTTTAAGGAGCTACAGGAACGACGTAATTAACATTCACCATGGTCTGTTGCCATCATTCAAGGGTGGTTATCCATCTAGACAGGCCTTTGAAGCTGGTGTTAAATTAATTGGTGCAACAAGTCACTTCGTGACTGAAGAACTTGATGCTGGACCTATAATTGAACAAATGGTTGAGAGAGTTTCCCACAGAGATAACTTGCAGAGCTTTGTGCAGAAATCAGAAAACCTTGAGAAACAATGCCTTTCCAAGGCTATCAGATCTTATTGTGAACTTCGAGTATTACCTTATGAAGAAAAGAAGACTGTTGTATTTTGAGGGAAACAACAAAATTGCCCGAACATAATGCACCAAAATGAAAATGGGATGCATTTGTATTTACATTCAATTCAATTATTTAATTGGATAATTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	94571	98605	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01433	purU	EC:3.5.1.10	Glyoxylate and dicarboxylate metabolism	map00630
			One carbon pool by folate	map00670

Gene Ontology

biological_process

GO:0006189 'de novo' IMP biosynthetic process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0008864 formyltetrahydrofolate deformylase activity

GO:0016597 amino acid binding

GO:0016742 hydroxymethyl-, formyl- and related transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015661.1	PF00551.14	Formyl_trans_N	127	304	3.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.267
SRR1783600	control	8.236
SRR1783602	moderate drought stress	11.555
SRR1811619	moderate drought stress	11.491

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.959
DRR006520	Root Summer glycyrrhizin high producing strain	5.652
DRR006521	Root Winter glycyrrhizin high producing strain	4.074
DRR006522	Root Winter glycyrrhizin high producing strain	4.124
DRR006523	Root Summer glycyrrhizin low producing strain	3.010
DRR006524	Root Summer glycyrrhizin low producing strain	3.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.010

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.250
SRR2868004	Drought Stress (root)	16.654
SRR2967015	Control (root)	16.191

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.171
SRR9715740	Leaf	28.688
SRR9715741	Leaf	18.330
SRR9715739	Root	1.575
SRR9715742	Root	3.568
SRR9715743	Root	2.436

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.630
SRR8749028	MeJA induced 9h	4.572
SRR8749029	MeJA induced 9h	3.176
SRR8749030	Uninduced	3.561
SRR8749031	Uninduced	2.169
SRR8749032	Uninduced	1.705

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.497
SRR8400027	Control - Root	15.404