Gene detail

Gene detail information of Glyur000345s00015658

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17370.1	1.00E-168	Oxidoreductase family protein
NR	XP_003525878.1	0	PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like isoform X1 [Glycine max]
COG	YP_007564702.1	3.00E-125	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
trEMBL	tr\|I1K0R9\|I1K0R9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G04860.1}

Sequence

Transcript Sequence

>Glyur000345s00015658.1
AAAGAGTTGAAGAGTGAGTGTTGGATTGGATTAGAGGAATCAAAAATCAAAATCCATGGCGAGTGCAATAGTAAAATACGGAATCATAGGAGTTGGGATGATGGGAAGGGAACATCTGATGAATTTGTACCATCTTCGCAGCGAAGGTGTGGCGGTTGTCGCCATTGCTGACCCTCACCTTCCCTCTCAACAACTCGCCCTCCACTTAGCTCACTCCTTTGGTTGGCCTCTCAAGGTCTTCTCAGGTCACCCGGAGCTGTTGGACAGTGGACTGTGTGATGTTTTGGTGGTATCAACTCCTAACATGACCCATCACAGGATTCTGATGGACATAATCAATCATCCCAAATCCCATCATGTACTGGTAGAAAAGCCACTCAGCACCACTGTCTCTCACTGCAAAGAGGTCATTCATGCTGCTCAAAAGAGACCAGATATATTAGTACAGGTTGGACTGGAATATAGATACATGCCACCTGTTGCAAAACTGATAGATATAGTTAAGGGAGGAAGCCTGGGGTGTGTTAGAATGGTAGCAATTCGGGAGCACCGGTTTCCGTTCTTGGTTAAGGTGAACAATTGGAATCGGTTCAATGTTAACTCAGGGGGCACTCTGGTAGAGAAGTGTTGCCACTTCTTTGATCTGATGAGGCTGTTTGTTGGTGCAAATCCTGTTCGTGTGATGGCTTCTGGAGCTATTGATGTTAATCACAAGGATGAAATATATGATGGAAAGGTTCCGGATATTATTGACAATGCATATGTTATAGTTGAATTTGACAATGGTTCTCGAGGAATGCTTGACCTTTGTATGTTTGCTGAAGGGAGTAAAAATGAGCAAGAAATATCTGTTGTCGGTGATATTGGAAAGGGAGAGGCCTTTGTTCCTGAGAGTGTTGTGCGGTTTGGAACACGAGAGGCAGGGCGAGATGGTGTCCAGACTTTGAAAGCTGAAGATCAACGAATAAAATATGATGGGTTACACCATGGGTCTAGCTATCTGGAGCATCTTAACTTCTTGTGTGCAATTAGGGGTAAAGGTGAAAAGGCTCCTGCTGTAGATCTCCAAGATGGATTAATATCTGTTGCAATAGGAGTTGCAGCACAGGTCTCCATAGAAAAGGGTCGATTTGTTACTATTGAGGAAGTTATGGATGGGCTTGAAGTTTGAGGGCGTTTGAACTCGGAAGGGAAAGTTACCCCTCCTTTCTCTCCCCAGTTCTTTTTCATTCATGTTCATTCAGATAAAAGCAATAGCCTCTGCTGAAATCTCACCTGTTCAAAGTTCTTTTCATTTTACTTTTGCTCCAGGATCCAGATCGTTTATTGTTTAGTTTGCAAGTGTTTTTCTTGTTCCTAATGAAAAATTATGCGCAGTTTCTACTAGGTAAAGCATAATATAGTGAAGTGATTTTAAATGTTATTATTGACCTTTTGTGGTAGGAATTTCAATAAAGCAATAGCAAGCATAGTTGTGTAATTTTATATTTTTACTTGTGTGCTGAGTATTGCTTAATTTGGTTCACAGCGCTTTGTTTCTTTTGGTTAGAAAAATTAAAAAAACAAATGAAGAATGGGTAATAATTAAGGTTTGCGAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	80677	83746	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015658.1	PF01408.17	GFO_IDH_MocA	7	133	1.90E-25
Glyur000345s00015658.1	PF02894.12	GFO_IDH_MocA_C	148	254	1.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.455
SRR1783600	control	12.370
SRR1783602	moderate drought stress	16.697
SRR1811619	moderate drought stress	16.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.526
DRR006520	Root Summer glycyrrhizin high producing strain	37.837
DRR006521	Root Winter glycyrrhizin high producing strain	36.474
DRR006522	Root Winter glycyrrhizin high producing strain	35.244
DRR006523	Root Summer glycyrrhizin low producing strain	30.718
DRR006524	Root Summer glycyrrhizin low producing strain	30.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.763
SRR2868004	Drought Stress (root)	15.925
SRR2967015	Control (root)	21.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.823
SRR9715740	Leaf	6.010
SRR9715741	Leaf	5.088
SRR9715739	Root	9.643
SRR9715742	Root	9.125
SRR9715743	Root	9.849

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.150
SRR8749028	MeJA induced 9h	11.191
SRR8749029	MeJA induced 9h	11.519
SRR8749030	Uninduced	10.680
SRR8749031	Uninduced	6.591
SRR8749032	Uninduced	5.240

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.969
SRR8400027	Control - Root	34.908