Gene detail

Gene detail information of Glyur000345s00015657

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16720.1	2.00E-93	Ribosomal protein L23/L15e family protein
NR	XP_007157273.1	9.12E-142	hypothetical protein PHAVU_002G057000g [Phaseolus vulgaris]
COG	YP_004576948.1	3.00E-55	50S ribosomal protein L15e [Methanothermococcus okinawensis IH1]
Swissprot	tr\|O82528\|RL15_PETHY	2.00E-133	60S ribosomal protein L15
trEMBL	tr\|V7CGG2\|V7CGG2_PHAVU	3.00E-142	Ribosomal protein L15 {ECO:0000256\|RuleBase:RU000663}

Sequence

Transcript Sequence

>Glyur000345s00015657.1
AAGTTTAATTTAGGCCCCGATGGACCCGGCCTATTCCCATCGGTAGCCACTAGCCGGCGTATATATAAAGTAAAAGTTAGAACAACTCTCCATCCAAAACCCTAACGTACTGCCACTGCGTGTTCCCGCTGTCGTCTGCACGATGGGTGCCTACAAGTATGTTTCGGAGCTTTGGCGCAAGAAGCAGTCCGATGTCATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAATATCGCCAGCAACCTTCTATTGTCCGCCTCACAAGGCCTACTCGCCCGGACAAGGCTCGCCGCTTGGGTTATAAGGCTAAGCAGGGTTATGTGGTTTACCGGGTTCGTGTTCGAAGAGGTGGCCGGAAGAGACCAGTTCCCAAAGGTATTGTCTATGGGAAGCCTACAAATCAAGGTGTTACCCAACTGAAATTTCAGCGCAGCAAGAGGTCAGTGGCCGAGGAGCGAGCTGGACGGAAACTGGGTGGCCTCAGGGTCCTCAATTCATACTGGGTGAATGAGGATTCGACTTACAAATATTTCGAGATCATTTTGGTGGATGCTGCCCACAGTGCTATAAGAAATGATCCAAGGATCAACTGGCTCTGCAATCCAGTCCATAAACACAGGGAACTGCGTGGCCTCACTTCTGCTGGGAAACACAACAGAGGTTTAATTGGCAAAGGACATCTGTACCACAAAGCACGCCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCTCTTCGTCGCTACCGCTGATTTTAATGCGTTATTTTATGTGGCTTTATTTTCTGAATATTCGGAGTGCATTATATGTTAGACTTTGGAAATCGTCCAGTTTTGAACGCTCGAATTATGTATTTTTTCTTGAATCTTGTTTCGGTGTTAAAATAGTAGAGATTAACGATGAAGTTTTTTATATCCACTTGGCAGAATTGCTTTTCCCATTTTGTTGTCGTCCTCTTTGTCGTTTTTTTTTGCTATGATAATTTATATCGTCATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	77773	80403	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015657.1	PF00827.12	Ribosomal_L15e	2	193	1.10E-97

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.669
SRR1783600	control	58.955
SRR1783602	moderate drought stress	58.186
SRR1811619	moderate drought stress	58.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	111.011
DRR006520	Root Summer glycyrrhizin high producing strain	109.088
DRR006521	Root Winter glycyrrhizin high producing strain	39.864
DRR006522	Root Winter glycyrrhizin high producing strain	38.418
DRR006523	Root Summer glycyrrhizin low producing strain	74.760
DRR006524	Root Summer glycyrrhizin low producing strain	74.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.096
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.798

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	184.638
SRR2868004	Drought Stress (root)	119.588
SRR2967015	Control (root)	119.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.396
SRR9715740	Leaf	57.472
SRR9715741	Leaf	63.850
SRR9715739	Root	169.974
SRR9715742	Root	125.236
SRR9715743	Root	123.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	142.933
SRR8749028	MeJA induced 9h	58.102
SRR8749029	MeJA induced 9h	88.496
SRR8749030	Uninduced	18.585
SRR8749031	Uninduced	7.795
SRR8749032	Uninduced	19.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	164.601
SRR8400027	Control - Root	143.667