Gene detail information of Glyur000345s00015653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16745.1 | 2.00E-177 | Exostosin family protein |
| NR | XP_004508932.1 | 0 | PREDICTED: probable glycosyltransferase At5g03795-like isoform X1 [Cicer arietinum] |
| COG | YP_677520.1 | 8.00E-06 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 2.00E-106 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|K7MLM4|K7MLM4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G15256.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00345 | 49108 | 52311 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000345s00015653.1 | PF03016.10 | Exostosin | 216 | 501 | 3.10E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.443 |
| SRR1783600 | control | 6.358 |
| SRR1783602 | moderate drought stress | 4.973 |
| SRR1811619 | moderate drought stress | 4.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.252 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.411 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.089 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.785 |
| SRR2868004 | Drought Stress (root) | 21.703 |
| SRR2967015 | Control (root) | 18.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.598 |
| SRR9715740 | Leaf | 8.153 |
| SRR9715741 | Leaf | 12.853 |
| SRR9715739 | Root | 1.339 |
| SRR9715742 | Root | 5.166 |
| SRR9715743 | Root | 4.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.160 |
| SRR8749028 | MeJA induced 9h | 14.431 |
| SRR8749029 | MeJA induced 9h | 6.000 |
| SRR8749030 | Uninduced | 12.242 |
| SRR8749031 | Uninduced | 11.153 |
| SRR8749032 | Uninduced | 9.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.562 |
| SRR8400027 | Control - Root | 16.007 |