Gene detail

Gene detail information of Glyur000345s00015647.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16760.1	0	acyl-CoA oxidase 1
NR	XP_004508938.1	0	PREDICTED: peroxisomal acyl-coenzyme A oxidase 1-like [Cicer arietinum]
COG	YP_290295.1	9.00E-72	hypothetical protein Tfu_2239 [Thermobifida fusca YX]
Swissprot	tr\|O65202\|ACOX1_ARATH	0	Peroxisomal acyl-coenzyme A oxidase 1
trEMBL	tr\|G7JHR0\|G7JHR0_MEDTR	0	Acyl-coenzyme A oxidase {ECO:0000256\|PIRNR:PIRNR000168}

Sequence

Transcript Sequence

>Glyur000345s00015647.1
CAATCATTGGTTTGTTTATTTATGTTTTTTTTTTCATTTTCACACACAATATATAAAGTGAAGAGTAATAGGCGCTAATTTCTGGCGTCATTACATTTGGCTGTTGGGGCAGAGAGTTAGCAAATGCCGTAGTTCTTCTTCCTTCTTCTTCCTCCTATTCATTCATTCATTCATTCATTCATTCATTCACTCCTCAAATCAAACCAACCAACCAAAGCCAAACAGAGCCATTGCACAAAAACCAAACAGTTTCGCTTTCGCTTTCGCATCGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAAGATGGAAGGCGTTGATCACTTGGCTTTCGAGAGGAACAAGGCTCACTTCGATGTCGACGCAATGAAGATCGTGTGGGCTGGTTCTTCTCNCGCTTTTGAAGTCTCTGACAGAATGGCTCGCCTCGTTGCCAGCGATCCGGCATTCAGAAAGGATAATAGACCCATGCTTGGCAGGAAGGATTTATTTAAGAACACTTTGAGGAAAGCAGCTTATGCATGGAAAAGGATTATTGAGCTCCGTCTTAATGAGGAGGAAGCTTCTATGCTTAGATCCTTCGTGGACGAACCTGCTTTTACGGATCTTCATTGGGGAATGTTTGTTCCTGCTATCAAAGGACAAGGAACTGAGGAACAGCAGCAAAAGTGGCTGCCTTTGGCATATAAGATGCAAATAATTGGTTGCTATGCCCAAACTGAACTTGGCCATGGATCTAATGTTCAAGGGTTAGAAACAANGGCAACATTTGATCCCAACACAGACGAGTTTGTAATTCACAGCCCCACATTGACTTCCAGCAAATGGTGGCCTGGTGGATTGGGTAAAGTGTCAACACATGCTGTTGTTTATGCCCGACTACTTACCGATGGTCAAGATCATGGAGTGCATGGTTTCATTGTCCAGCTGCGTAGCCTGGATGATCACTTACCCCTTCCGGGCATAACTATTGGTGATATTGGAATGAAATTTGGAAATGGAGCATATAACACCATGGATAATGGGGTTCTAAGGTTTGACCATGTACGAATTCCAAGGAATCAAATGTTAATGAGGGTTTCACAGGTTACAAGGGAAGGAAAATATGTACAATCAAATGTTCCAAGACAATTAGTTTATGGTACTATGGTATATGTGAGACAGACAATTGTATCTGATGCATCAACTGCTTTGTCGCGAGCTGTATGCATTGCTACAAGATATAGTGCTGTGATTGATTATAAAACACAGCAAGCTAGGCTCTTCCCTTTGCTAGCCTCTGCTTATGCTTTCAGATTTGTTGGTGAGTGGTTGAAATGGCTNTATACGGATGTGATGAAAAGATTGCAAGCCAATGATTTTTCAACGTTGCCTGAGGCTCATGCATGCACAGCGGGGTTGAAGTCCTTGACTACCTCAGCGACTGCTGATGGAATTGAAGAATGCCGCAAACTATGTGGTGGCCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCCGTATATGTTCCTACCTGCACATATGAAGGAGACAACATTGTGCTGCAATTACAGGTTGCAAGGCATCTCATGAAGACTATTTCTCAGTTAGGCTCTGGAAAAAAGCCGGTTGGTACAACAGCTTACATGGGACGAGTGGAACAACTAATGCAATTTCGTTCCGATGTTCAGAAAGCGGAGGATTGGTTGAAGCCTAATGTCATTCTGGGAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCCTGTGCTCAAAATCTTACCAAGTTTACCAATCCTGAAGAGGGTTTCCAAGAACTCTCAGCTGATCTAGTTGAGACAGCTGTTGCTCATTGCCAGTTGATTGTTGTTTCCAAATTTATTGAGAAGTTGCAGCAAGATATACCCGGAAAGGGAGTGAAACAGCAACTAGAACTTCTCTGTAGCATCTATGCTTTGTTTCTTCTTCATAAGCATCTGGGTGATTTTGTTTCAACTGGCTGCGTCACTCCCAAACAGGGTTCACTCGCCAATGACCAGCTAAGATCATTGTATTCACAGGTTCGTCCGAATGCAATTGCGCTTGTTGATGCGTTTAACTACACTGATCACTACCTCAGTTCGGTACTTGGTCGCTATGATGGAAATGTGTATCCAAAGCTATATGAGGAGGCATGGAAGGATCCATTGAATGATTCAGTTGTGCCAGATGGCTTTGAAGAGTATATTCGACCAATGCTAAAGCAACAACTTCGTAATGCTAGACTCTAAATAAATTTTATATAACTGGACTGTCGATGCAGGAGGAAGTTAAGTACACTTTCTATAAAGATGTGTACTGATGAAGTTGTATGGAAGGAAAAATAAAAATGTTTTAGTAATATACGTAGAAATTCCCAAGCAAGTTCGTTTCCATGGTGGCTATTCATGAGAAAGAGCTTGCAATTTGGTGTACTTCGATGATATCATTTATTACATTAATTATTGACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00345	7152	13883	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00232	E1.3.3.6, ACOX1, ACOX3	EC:1.3.3.6	Fatty acid metabolism	map01212
			Fatty acid degradation	map00071
			alpha-Linolenic acid metabolism	map00592
			Biosynthesis of unsaturated fatty acids	map01040
			cAMP signaling pathway	map04024
			Peroxisome	map04146
			PPAR signaling pathway	map03320

Gene Ontology

biological_process

GO:0006631 fatty acid metabolic process

GO:0006635 fatty acid beta-oxidation

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0005777 peroxisome

molecular_function

GO:0003995 acyl-CoA dehydrogenase activity

GO:0003997 acyl-CoA oxidase activity

GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000345s00015647.1	PF14749.1	Acyl-CoA_ox_N	17	132	4.80E-32
Glyur000345s00015647.1	PF02770.14	Acyl-CoA_dh_M	134	192	5.70E-10
Glyur000345s00015647.1	PF01756.14	ACOX	461	642	1.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.943
SRR1783600	control	9.145
SRR1783602	moderate drought stress	12.330
SRR1811619	moderate drought stress	12.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.633
DRR006520	Root Summer glycyrrhizin high producing strain	12.442
DRR006521	Root Winter glycyrrhizin high producing strain	50.747
DRR006522	Root Winter glycyrrhizin high producing strain	49.253
DRR006523	Root Summer glycyrrhizin low producing strain	12.673
DRR006524	Root Summer glycyrrhizin low producing strain	12.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.649

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.221
SRR2868004	Drought Stress (root)	34.301
SRR2967015	Control (root)	53.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.852
SRR9715740	Leaf	12.562
SRR9715741	Leaf	17.624
SRR9715739	Root	9.788
SRR9715742	Root	14.807
SRR9715743	Root	13.299

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.454
SRR8749028	MeJA induced 9h	42.544
SRR8749029	MeJA induced 9h	13.508
SRR8749030	Uninduced	49.885
SRR8749031	Uninduced	33.575
SRR8749032	Uninduced	34.659

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.891
SRR8400027	Control - Root	26.604