Gene detail

Gene detail information of Glyur000344s00030070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52800.1	5.00E-69	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003553825.1	1.24E-173	PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1.2-like [Glycine max]
COG	YP_008518749.1	4.00E-19	2OG-Fe(II) oxygenase superfamily protein [Variovorax paradoxus B4]
Swissprot	tr\|Q944Z5\|AOP1V_ARATH	9.00E-64	Probable 2-oxoglutarate-dependent dioxygenase AOP1 (Fragment)
trEMBL	tr\|I1N750\|I1N750_SOYBN	5.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G13520.1}

Sequence

Transcript Sequence

>Glyur000344s00030070.1
ATGGCACAGGTTTGGAGCAATGACAGGATACCCGGTTGTGTACATAGAGTCTTCATGAATTCAAAGATAGACAGATACGCCACGGGACTACTTTCATATGCTGGTAAGATAATGGAANCANAGGAGGAGCTAGTTGATGAGGAACACCCTCTGCGTTATAAACCATTTGACCATTATGGATACCTGCGTTTCTTCCTCACAGAAGAAGCTTTGAAATCTGACTCTCGAATCAAGACATACTGTGTAGTTTGTGAATCTCAGCTTCCTGTCATTGATTTCTCCAGTGAAAACATGAAACCCGGCACCGATACATGGCATGCAGCATGTCGGGTTGTGCGGGGAGCATTTGAGGATTGCGGTTGCTTCCTAGCACGGTTTGATAAGGTTGCTCCCGAGCTTGTGGACTCTGTTTTTGGTGCAANGGAAGAGCTATTTGGTCTCCCATTAGAAACAAAAAGGAGAAAAACAAGTGATAAACCAAACCATGGCTACACCGGACAAGTATCTTCATCCCCTCTATTTGAATCTTTTGCTGTTGACAATCCATCGAGTATTGAAGATTGTCAAAAATTCGCACACATCATGTGGCCACCAGCAGGAAATTATCAACTTGACCAANCCGTGAAGAGAATGGTGTTTGAAAGCTATGGAGTGGACAAGCAGAAATGTGAGTCGTTCCTTGAATCAACCAATTGCGCGTTTCGAAGCTACAAATACAGGATACCCGGAATGGATGAGAGCAATGTGGGGGTGAATGCTCATACGGACTCAACCTTCATAACCATATTGCATCAGAAGATTGATGGCTTGGAAATTAAATCCAAAGATGGGGAATGGTTTGGGGTTGATGCCTCGCCTTTGTTTTGCGTCATGGCTGGTGATGCATTTATGGTATGGAGTAGTGAAAGGATACGGGCTTGTGAGCACCGTGTGATCTTGAAATCAAAGGTGGTTNGGTACTCCTTGGGATTACTTTCATACAGTACTAAGATGGTGGAGACATTGGAGGATCTAGTCGACGAGGAACATCCTATACGTTACAAGCCATTTGACCATTATGGATATGTTGGNTTCCGTTTCACAGAAGAAGCCGTAAAATGTACCAGTCGAATCAAAGCATATTGTGGTACTTACTTCATTCTACAGAGCAAGCGCATAATAACAATGGGTTCTCAAACACCTTCACAACTTCCCGTCGTTGACTTAACCGACATCGAAAACCTGAAGCCTGGTACAGAACCATATCTTTCAGCCTGTAACGTGGTTCGAACTGCACTAGAGGACCATGGTTGTTTCATGGCGCGCTACGACAAAGTTGGTTCAGAACTACGCGCCTCTGTTGTCTCTGCAATGGAGGAACTGTTTGGTCTGCCACTGGAAACCAAAAAGCAAGAGACTAGTAAGAAGCTTTTCCATGGTTACTACGGACAATTCCCATCTCTTCCCTTATACGAATCGTTTGGCATCGAAGATCCGTTGACCATTCATGGATGTCAAAATGAAAGCGTGCATGAGTATTCAAAGCTACTGATAGAATTAGACCATGTGGCGAAGAGAATGGTGTTTGAGAGCTATGGCGTGGACATGAAGCGATGCGAGTCTTTCATTGAATCGGGCAATNATCTCCTTAGGTGTCTCCAGTATAGACCACCCCAGGTGGGTGAGACTGATTTGGGAATGCAGCCTCACACTGACTTGACCGTGCAATCCATATTGCATCAGGTTAATAACGTTGATGGCTTGGAAGTCAAATTGAAGAATGGAGAGTGGGTCGTGGTTGATCCCTCACCATCCATGTTTGTGGTCATGGCTGGAGATGGTTTCAAGGTTTGGAGTAATGACAGGATACGCCCATGCGAACACCGAGTTATAATGAATGCAAAGGAAACTAGGTACTCCATGGGACTATTTACTTTTAATAGCAAGATGGTGTATATACCAGAGGAGGTGGTTGATGAGCAACATCCCTTGCGTTATAAACCATTCGACCACTCTGAATACCTTCACTTCTTTGACAAAGAGAAAATCAAAGAGTCCGATTTACGAGTCAAAGCTTATTGTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00344	92584	108831	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000344s00030070.1	PF14226.1	DIOX_N	88	168	4.90E-11
Glyur000344s00030070.1	PF03171.15	2OG-FeII_Oxy	232	315	6.70E-11
Glyur000344s00030070.1	PF14226.1	DIOX_N	397	477	4.30E-08
Glyur000344s00030070.1	PF03171.15	2OG-FeII_Oxy	542	637	1.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.033
SRR1783600	control	1.036
SRR1783602	moderate drought stress	0.115
SRR1811619	moderate drought stress	0.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.708

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	151.424
SRR2868004	Drought Stress (root)	129.344
SRR2967015	Control (root)	65.867

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.922
SRR9715740	Leaf	10.090
SRR9715741	Leaf	25.445
SRR9715739	Root	0.052
SRR9715742	Root	0.071
SRR9715743	Root	0.215

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.565
SRR8400027	Control - Root	7.240