Gene detail information of Glyur000343s00025704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04550.1 | 1.00E-169 | Protein of unknown function (DUF668) |
| NR | XP_004502632.1 | 0 | PREDICTED: uncharacterized protein LOC101505237 isoform X1 [Cicer arietinum] |
| trEMBL | tr|I1JYT6|I1JYT6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G41580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00343 | 186198 | 187988 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000343s00025704.1 | PF11961.3 | DUF3475 | 27 | 83 | 4.10E-20 |
| Glyur000343s00025704.1 | PF05003.7 | DUF668 | 435 | 528 | 4.20E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.856 |
| SRR1783600 | control | 11.681 |
| SRR1783602 | moderate drought stress | 6.426 |
| SRR1811619 | moderate drought stress | 6.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.844 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.847 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.971 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.581 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.574 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.495 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.708 |
| SRR2868004 | Drought Stress (root) | 12.293 |
| SRR2967015 | Control (root) | 8.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.277 |
| SRR9715740 | Leaf | 28.663 |
| SRR9715741 | Leaf | 37.798 |
| SRR9715739 | Root | 4.432 |
| SRR9715742 | Root | 15.167 |
| SRR9715743 | Root | 11.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.655 |
| SRR8749028 | MeJA induced 9h | 30.209 |
| SRR8749029 | MeJA induced 9h | 28.101 |
| SRR8749030 | Uninduced | 28.180 |
| SRR8749031 | Uninduced | 12.475 |
| SRR8749032 | Uninduced | 12.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.192 |
| SRR8400027 | Control - Root | 14.593 |