Gene detail

Gene detail information of Glyur000343s00025701.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53110.1	2.00E-82	RING/U-box superfamily protein
NR	XP_003602221.1	0	RING finger protein [Medicago truncatula]
Swissprot	tr\|P0CH02\|AT21B_ARATH	8.00E-68	Putative RING-H2 finger protein ATL21B (Precursor)
trEMBL	tr\|G7J6U0\|G7J6U0_MEDTR	0	RING-H2 finger ATL21B-like protein, putative {ECO:0000313\|EMBL:AES72472.1}

Sequence

Transcript Sequence

>Glyur000343s00025701.1
ATGAACAATATTCCCAATCCCATATTTCTGCTCTCTTCCCTCTTCCTCTTCAACCAAGCAAACATAGAAACATGCTTAGACACTGTTTGCCAAATGAACGAACCAATAATCCGATTCCCGTTCCATATAGAAGGAAGACCACAAGCAATGACATGTGGGTATAAAGGATTCAAAGTACTCTGCAGTGAGGAGGGCCAAACACTCCTTAACCTACCTTATTGGGGAGAACTNAAGATCCAAACAATAAACTACGCCGCACAGGAACTATATGTAAACGACCCCAATAACTGTCTCCCAAAACGGCTTCTCTCTCTCAACCTCTCTGGTTCTCCATACGACGCCGTTTACTANCAAGAATTCACCTTCTTTAATTGCTCCTTCAACTTGGAGTACCTCATCGCTCGATACAAACCCATTCCTTGCCTCAGCGATTATTCCAATTACGCCGTTTTCGCAACGCCTTCTAAAACGGCGTCGTCCGTTCACCTGTCGTCTGTNTGTGAGTTGNTTGAGACGGTTANGGTGCCCGTTCAGTCGCCGTTTTATGACCACGTGTTGTCGTCTGAATTGAACGACGATCTTCGCTTGTCGTGGGATTCGCCTCCGTGTGGGAAGTGTGAGTCACGCGGTGGCCGATGTGGCTTCAAGTTCAACGGTAACTCCAGTACTCTTGAACTTGCCTGTTACGATGACCCTTCACGACAAGGGATTTCTCGTGGTGCCAGTTACATTATAGNCATATGTGTTGGGGTACCGGCGTTGTTGTGCTTCACTGCATTATTGAGTTGCATATGTAGCCGGTTCGGAATCGGGACCCGAGGTTGGGCTTGGGCTAGTGAGACGGTGGCNGATTTTGAGCCTCTAATGGGCCTTGATAGGCCCACAATTGAGTCCTACCCAAAAATAGTTATCGGTGAGGGAAGATTACTTCCCAAGGCAGATGACAAGACATGCCCAATTTGCCTGTCGGAGTACGAACCCAAAGAGACGGTGAAAGCCATACCTGAATGTGGACATTGCTTTCATGCACAATGTATTGATGAATGGCTTCCATTGAATGCGTCATGCCCAATTTGCCGAACTTCTCCCCCAAAGTTACCACAACCGCTAGCGAGATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00343	162732	166510	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000343s00025701.1	PF13639.1	zf-RING_2	317	360	5.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.506
SRR1783600	control	1.570
SRR1783602	moderate drought stress	1.094
SRR1811619	moderate drought stress	1.148

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.191
DRR006520	Root Summer glycyrrhizin high producing strain	1.787
DRR006521	Root Winter glycyrrhizin high producing strain	0.198
DRR006522	Root Winter glycyrrhizin high producing strain	0.193
DRR006523	Root Summer glycyrrhizin low producing strain	1.722
DRR006524	Root Summer glycyrrhizin low producing strain	1.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.164

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.003
SRR2868004	Drought Stress (root)	16.957
SRR2967015	Control (root)	17.949

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.507
SRR9715740	Leaf	0.291
SRR9715741	Leaf	0.192
SRR9715739	Root	0.976
SRR9715742	Root	1.528
SRR9715743	Root	1.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.342
SRR8749028	MeJA induced 9h	0.755
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.287
SRR8400027	Control - Root	1.901