Gene detail

Gene detail information of Glyur000343s00025700

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G06160.1	splicing factor-related
NR	XP_004502635.1	PREDICTED: splicing factor 3A subunit 3-like [Cicer arietinum]
trEMBL	tr\|V7AVA9\|V7AVA9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW08538.1}

Sequence

Transcript Sequence

>Glyur000343s00025700.1
GACGGGCTTTGCTTTGGTTTATTAGCGCGAGAGAGAAAGAGAGAGAGAAAGAGAGAACGAAAACGAGAGCAAGAGCAAAGAGAGGATGTCGTCGACGTTGCTGGAAGTGACTCGNGCAGCACACGAGGAGGTTGAGCGAGTGGAGCGGCTGATAGTGAAGGACCTCCAGAATGAGCCCACAAGCAACAAAGAGCGCTTGTTTCAGAGTCACCGCGTGCGTAACATGATCGACACCATTACTTCCACCACCGATAGGCTCATTGAGATATATGAAGATAAAGACAATGCAAGGAAAGATGAGATTGCTGCACTTGGAGGTCAAACTGCTACTGGAATCAATGTTTTCAGTGCCTTCTACGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGATGCTAATGACGATTTTGAAGCACTTCTTAAAGAGGAACCGCAAATTGAGTTCAGCGGAGAGGAAGCTTTAGGTCGATACTTAGACTTGCATGAATTGTACTATCAGTATGTCAATTCTAAGTTTGGAGAGCCAATCGAGTATTCTGCATTCCTTGATGTTTTTTCTGAAACGGATAAGATTCCACGCAAAATGAAAATGACCAAGCAGTACAGGGAGTACTTGGAGAATCTTTTGGAGTACCTGTTATACTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGGATTTTTTCAAAGGTAACAACCGAGTTTGAAGAAAATTGGGCTACCGGAAAGGTACAGGGATGGGAGANTGTTAATCAAGAGAATGGACATGTACCTGCTCAGCACGCTGCAATTGATCTTGATTATTACAGTACAGTTGAGGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCATTGGGACTTAAGAGTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCACTTTGCTAAGGGGGCACGTGGTTTAGAAAGAAATGGGGTTGCTGCAGTTCCACAAGAAGATGAAAATTTAAAAGAAATTGCTTTAATGGAGGCCAAAATGAAAAAACTGTGTGATTTGTTAGATGAGACAATTGCTAGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGAGGACTCTGAAAGCGAAGACGAGGAGCAGCAGATTTATAATCCCTTAAAATTGCCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTCCATGGTCTGGGTCAGGAATTCAAATGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAGCGACATTTCAAAGAATGGCGCCATCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAGGATCTCTGGAAGAAGATACAGCAGAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGATTTACAACGCCAGGGACTGATATGAAGAAAGAAAAAAAAAGCAACTTCTTTTCAATTCTTTTAGTAGAAAAAAAAAAATAGATCCTCTTTTCACCTCATCTGTGTAGTAGAAGCAGTTTGTTTTCGGCGGAGTTAATAGGGGAATGGTTGTATCTTAACAAAATATTTAGCACTACCGGGGAGAAGAATGGGGTGAATTGTGCTGCACTTTTGTGATCAATATTTATCGTTGCTGTTGCATTGTATCGATTATAGGTTTTTGGGTGATAGTAGCTGAGAAATGACTTTCTTTAATTGGAGATTCAATGGAATATTGTTACTTTGCATGTCAGGTTATGTTTGGAATACATGCATGATCACTAAACAGTGCCTTAGTGGAAACAACCATCGCATGTAGTTGGACNAATGGACGTGGTGCATATTTTGTTCATGAAATTGCACATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00343	151567	160034	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000343s00025700.1	PF12108.3	SF3a60_bindingd	79	105	1.10E-09
Glyur000343s00025700.1	PF13297.1	Telomere_Sde2_2	245	304	8.40E-27
Glyur000343s00025700.1	PF11931.3	DUF3449	329	508	1.80E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.065
SRR1783600	control	50.468
SRR1783602	moderate drought stress	51.215
SRR1811619	moderate drought stress	51.488

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.395
DRR006520	Root Summer glycyrrhizin high producing strain	51.783
DRR006521	Root Winter glycyrrhizin high producing strain	54.522
DRR006522	Root Winter glycyrrhizin high producing strain	52.633
DRR006523	Root Summer glycyrrhizin low producing strain	47.475
DRR006524	Root Summer glycyrrhizin low producing strain	47.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.950
SRR2868004	Drought Stress (root)	47.868
SRR2967015	Control (root)	52.180

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.121
SRR9715740	Leaf	38.263
SRR9715741	Leaf	35.968
SRR9715739	Root	2.129
SRR9715742	Root	17.604
SRR9715743	Root	13.051

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	144.609
SRR8749028	MeJA induced 9h	91.427
SRR8749029	MeJA induced 9h	120.595
SRR8749030	Uninduced	73.706
SRR8749031	Uninduced	80.444
SRR8749032	Uninduced	55.170

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.470
SRR8400027	Control - Root	49.871