Gene detail

Gene detail information of Glyur000343s00025689.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53420.1	2.00E-36	CCT motif family protein
NR	XP_004502639.1	1.00E-94	PREDICTED: uncharacterized protein LOC101507417 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7J6V3\|G7J6V3_MEDTR	2.00E-92	CCT motif protein {ECO:0000313\|EMBL:AES72485.1}

Sequence

Transcript Sequence

>Glyur000343s00025689.1
ATTTAAACATAATTACATAATAACTACTAGTGNAGAGCCAGCACTTCACGCCCACACCTTCTACATTCACATCTTTTTTTTTTACGGTTAATTATANTTTTTTTGTAAAAATAGTTATTACATGGAGGAAAAACAGACAAATTTGTGCAGTTTGTCTGCTAGTAATAATAATAACATAAATTCTCTCTCTTGCTTGGCCCAAATCATCAAAGCTCTTTGTTTTTAGNAACAACAACAAATGTGTGTGTGAGCTTCAAGTTCTCTTGCTCTGTTTTTCACGCTGTTTCCTGTCTAGCTCTCAAAACCAAGCACAAAGTNTTTCTGTGTTTGGAGAAATGTATGCAGAGACTGGCCTTCTATTCCCATATCGACACAACAACTTCTCTCAAGAGCTTCACCAACTTGAGGAGTACTGCAAAACCCACAAGTCCAATGCCTCAATGAGTGACCTTGTTCAATCTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCACCGGAACCAATTATTGAAGAGTCAGTCATTGACATGGATCCCATGACAGCGGCGATCTCGATGATATCTTGCGGGGAAGATGTAAAGTCCACAGACATTGCTATTCTTCAAAATGAACAGCTTCTGACTGAGGTGTTCTATGAATGCGAAAAGGATCTCTTCGAAAAGGCGGCGATAGAGTCACCACTCTCTGAGATTCTGGAAATTAAGGTTCCTGTTCTGAACATAGATGAGAAGTCACTTCAAGAATACACGCCGTTACCTAAGAGTGTCAGTTCAGGAAGTTTGAGCTCGATGGACTGGATGCATGGTTCTGCAATGAAGCCTGCTTTCCTTGATATCCCAGGAATAGATTTCGATGTGTATGCTTGCAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGCGGAAGATTTGCAAAGACTGAAGAATCTGAGGCGCCCAAGAGGGAATGACTTGGAAGGAAGAAAGTAGGAATCACAAGTAGTTATCTATATCTGATCAAGCTATATGAATTGAAGAACTCGGTATAATATGTGCATGGAATATATATATATACTAGGTGGAGTTCTATAAGTTGAACAGATATAGACAAATAAACCAGATGTGAAACTTCTTAGGGTAGTTCATCTCTTATCTGTTGTATTAACTATCTCTTAACTATCTCTCTCTTGATGGAAATGACCTTTCTAGATATGTAAATAGGTATGTTGAATAAGAGAAGGGAGAAAAAGTGGCCCTTTGCTCATGTATACTAGCTTATGGATATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00343	14787	21338	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000343s00025689.1	PF06203.9	CCT	181	202	2.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.331
SRR1783600	control	47.964
SRR1783602	moderate drought stress	53.784
SRR1811619	moderate drought stress	53.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.913
DRR006520	Root Summer glycyrrhizin high producing strain	39.143
DRR006521	Root Winter glycyrrhizin high producing strain	21.695
DRR006522	Root Winter glycyrrhizin high producing strain	20.583
DRR006523	Root Summer glycyrrhizin low producing strain	21.206
DRR006524	Root Summer glycyrrhizin low producing strain	21.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	155.223
DRR006526	Leaf Summer glycyrrhizin high producing strain	152.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.166
SRR2868004	Drought Stress (root)	10.714
SRR2967015	Control (root)	10.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.390
SRR9715740	Leaf	2.455
SRR9715741	Leaf	3.776
SRR9715739	Root	2.557
SRR9715742	Root	10.418
SRR9715743	Root	9.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.456
SRR8749028	MeJA induced 9h	0.089
SRR8749029	MeJA induced 9h	0.302
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.257
SRR8749032	Uninduced	0.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.196
SRR8400027	Control - Root	38.572