Gene detail information of Glyur000342s00013742 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44200.1 | 1.00E-83 | CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor |
| NR | XP_004486406.1 | 0 | PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cicer arietinum] |
| trEMBL | tr|I3S5Q7|I3S5Q7_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK35599.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00342 | 182447 | 184725 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000342s00013742.1 | PF10197.4 | Cir_N | 10 | 46 | 1.80E-15 |
| Glyur000342s00013742.1 | PF12542.3 | CWC25 | 64 | 155 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.620 |
| SRR1783600 | control | 19.763 |
| SRR1783602 | moderate drought stress | 20.741 |
| SRR1811619 | moderate drought stress | 20.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.627 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.866 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.921 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.296 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.494 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.759 |
| SRR2868004 | Drought Stress (root) | 25.828 |
| SRR2967015 | Control (root) | 25.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.504 |
| SRR9715740 | Leaf | 18.448 |
| SRR9715741 | Leaf | 18.076 |
| SRR9715739 | Root | 2.069 |
| SRR9715742 | Root | 12.760 |
| SRR9715743 | Root | 12.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.354 |
| SRR8749028 | MeJA induced 9h | 68.214 |
| SRR8749029 | MeJA induced 9h | 51.994 |
| SRR8749030 | Uninduced | 56.589 |
| SRR8749031 | Uninduced | 64.781 |
| SRR8749032 | Uninduced | 45.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.358 |
| SRR8400027 | Control - Root | 15.864 |