Gene detail

Gene detail information of Glyur000342s00013740

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44190.1	3.00E-59	Family of unknown function (DUF566)
NR	XP_003546223.2	0	PREDICTED: protein ENDOSPERM DEFECTIVE 1-like [Glycine max]
Swissprot	tr\|O80588\|EDE1_ARATH	1.00E-67	Protein ENDOSPERM DEFECTIVE 1
trEMBL	tr\|K7MB04\|K7MB04_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G13020.2}

Sequence

Transcript Sequence

>Glyur000342s00013740.1
ATGGTGGAATTCCAAGTTCAAGTTTGTGCAGCAACCGACACCATGCAAGAGCACAAGCACCACCACCTNAAGGTCGATGATGATTCAGACAACCCCGCTCCCCCTCAGCCGCCGCCACCGCCGCCGCCTCATCACCGGCGACCTAGGGTCCGTGAGGTCAGCTCCCGATTCATGTCGCCGTCGGTTTCCTCCTCTCAGAGGCGACAGCATCATCGGTCGGAATCGGAACACTCCGGCGACGAGAACTCGGAAACCCCATTCCCAATTGGGTATTCCGTTTCTCAGAGGAAACAACACCGTGCCATGAAGCTTTTCAAGGAGACAAATGGAGTTGTTGTTGAACAGGTGTCAAACCCACATCACCCTTCAAAGTCTTGTTCTGCTAGAATTGGAACCAATACTTCTTCTTCAACTTCCAATTCCACACCCTGTGCTTCTTCTTCTTATTCTTCTTATGCTAGGCCTGACACTCCCACTCCCACAATTTCTGTGTCTTCAAGATACAGACTCGCACATCACAACAATCACCATAGCCATAGCAGGTCCATCAATGGCACTGCCTCAGCTGCTTCGAAATTGTTGCAAGCAAGTGGCATGTCAATGGCCAAGGGAAACGCTTCTGTTTCTTCTTCTTTGGAATCCAATTCCCGTGATGATTCTTCTGTTATAAGTTGCAGCACACAGTCGCTTCCTGAACTGTGTACTTCAGAGAATGATAGAGATATGATGCAGCCTGCTATGTCCACTGTATCATCAGTGACTGAGAAAATTGCCAACAGTGTGGACTTGAAATTCCACCGCCACCCTTCCCCTTTGTCACGTTCTGTTAGCTTGCCTTCTTCNGGAGGCAGTGAGAAGCAGCAACCTCCTGCTGCTGCTTCTTCTATCTCCAAGCAGTTTGGAATTGGGAATCAATCCTCCAATCATTTCAAGTTAGGAGGAGGAGGNCTTAGTTTGCCACCTGTTGCTCCTCAGTGTGCAAAACCTGCAGCAGTGGACAACACAAGGAAAGGGAAGAAAGGCNCTAGTCACCAGGAAGATGTGCATTCCCTCAGATTGCACTATAATCGTTATCTGCAATGGAGATTCGCCAATGCAAGAGCAGCCTCNGCGATGAAAGCTCAGCGAAAAGAAAGCGAGAAAGCACTATATTCTCATGCAATGAAAATATCAGAAATGCGTGATTCTGTGAACAGGAAACGCGCAGAACTGGAGCTCTTGCGGAGATCAAAGACTCTGTCAACAATTCTTGAAGCTCAAATTCCATATCTGGATGAGTGGTCTGCTATGGAAGAAGATTATTCAGTCTCTATTACTGAAGCAATTGAGGCTTTGTTGAATGCCTCAGTGCAACTTCCAATTGGTGGGAACGTTAGGGTTGATGTAAGAGAGGTGGGGGAGACGCTGAATTCAGCATTAAAGATGATGGAAACAATTGTTTCCAATATACAAAGATTCGTGCCAAAGGCAGAAGAAACAGATNTTTCTATCTCAGAATTAGCCAGAGTTGTTGGAGGAGAAAGAGCTCTTATTGGAGAGTGTGGAGATTTATTGTCAAAGACATACAAGTCACAGGTGGAGGAGTGCAGCTTAAGGGGTCAGCTAATCCAACTGCATTCAATTTGCCATAATAAGAATAAGAACAAAGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	173746	177104	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013740.1	PF04484.7	DUF566	146	511	7.90E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.110
SRR1783600	control	1.049
SRR1783602	moderate drought stress	0.729
SRR1811619	moderate drought stress	0.689

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.641
DRR006520	Root Summer glycyrrhizin high producing strain	1.667
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.482
DRR006524	Root Summer glycyrrhizin low producing strain	0.521
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.410
SRR2868004	Drought Stress (root)	1.736
SRR2967015	Control (root)	2.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.562
SRR9715740	Leaf	0.058
SRR9715741	Leaf	0.368
SRR9715739	Root	0.714
SRR9715742	Root	0.725
SRR9715743	Root	0.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.299
SRR8749028	MeJA induced 9h	5.542
SRR8749029	MeJA induced 9h	2.804
SRR8749030	Uninduced	0.257
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.897
SRR8400027	Control - Root	2.811