Gene detail

Gene detail information of Glyur000342s00013739

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54370.1	1.00E-134	sodium hydrogen exchanger 5
NR	AES64654.2	0	Na+/H+ exchanger 1 [Medicago truncatula]
COG	YP_004417924.1	2.00E-25	sodium/hydrogen exchanger family protein [Pusillimonas sp. T7-7]
Swissprot	tr\|Q8RWU6\|NHX6_ARATH	0	Sodium/hydrogen exchanger 6
trEMBL	tr\|G7ISS2\|G7ISS2_MEDTR	0	Sodium/hydrogen exchanger {ECO:0000256\|RuleBase:RU003722}

Sequence

Transcript Sequence

>Glyur000342s00013739.1
ATGGAAGCTAGAATGGATTCTTCAGTTGCAGGCAATGCAAGATTTCGAAGGAGGATAATTATGAAATGCAATAAAGCAAAGCGAATGACTTCTAATGCAGATGAAAATAACGAAAACCAATATGTTAGAGGAGCAAGTTCAAACCTTTCACAAGTTGTTCAAAAGATATTTCCTCCTACTCGATCTCCTTCCGGCATAATGGATTGTTCATCTGCAGCTCATGATGCAGGATCACGAAGAGGGAAAACTATGAAAAGCAACAAATCAGTTGGACTGTCTTCTACTACAGATGAAAATATCGTTCCACGATATGTTAAAGTACCAACTTCAAACTTTTCACACTTTGGTGAAAATAGAATTCCTCCTTCTCCATTTCCTTCTGCCATAAGAGATTCTTCATCTGCAGCTGATGCAAGATTTAGAAGAAGGATGATTTTGAAACGCAAAAGATCCACTTCATTGTCTTCTACTACAGAACAATCGAATCGAATCGAATTGAATTCAATCGAGTTGGAATTTGGAATGGGCTCGGAGAATGAGATTTCTCCGGCGGATAGTCATAGGTCTCCTCCCGGCAAGGAGCAACAAGCCGCCGGCGTCGGAATCCTTCTCCAGATCATGATGCTGGTCTTGTCCTTCGTTCTCGGCCACGTTCTCCGTCGTAAGAAGATTTACATCATTCCTGAAGCCAGTGCTTCTCTTCTCATAGGGTTAATTGTTGGTGTACTAGCTAACATTTCAGACACTGAAACTAATATCAGGGCGTGGTTCAATTTTCACGAGGAGTTTTTTTTCTTGTTCCTTTATCTTGGTGGGTTGGTCTACCTCATGTATAGACTACCTTTTGTGGAGTGCCTGATGTTTGGTGCTCTTATATCGGCAACCGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTGGGCACAGATGTCAATCTGTATGCTTTAGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATTGGTTAAAACTCATCCATCTGGACAGAATTTAGTCATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCTATGTCTGCAGGGTTGGATATTGACAACCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATATTTCTCGTACATGCTGGCCGAAGGCCTTGGTCTGTCTGGTATTGTATCAATACTGTTCACAGGAATAGTCATGAAGCACTATACGTATTCAAATTTGTCACAAAGTTCTCAAAGATTTGCCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGANACATTTGTATTTATATACATGGGTTTTGATATTGCCATGGAGCAACATAGCTGGTCTCATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGAGCGGCAAATGTCTTCTCTTGTGCTTACCTGGTCAATTTGGTCAGACCTNCTCATCGAAAGATACCTCCAAAACACCAAAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGTCAGACCATCTTCACTGCAACTACAGCAATAGTTGTTTTGACGGTATTGCTGATTGGTGGTTCAACTGGTACCATGCTGGAAGCTCTAGATGTTGTTGGTGGTGACAGTCATAATGATAGTGCTTTGGCTTCAGTTGGTATCATCACGAATTATGACAACAATGGTTATGTTGCTCCTTCATNCGATGAAGAACCATCATCATCTGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCACAGGAGCCGAGCCTTTTACTTCTTCTACAAGATCGGGATTTCACGAGTAGAACCATTATTCATCGTTTTCTCACCTAGGTATAGTTATACTGAGTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	160884	172073	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013739.1	PF00999.16	Na_H_Exchanger	264	553	7.80E-40
Glyur000342s00013739.2	PF00999.16	Na_H_Exchanger	262	576	3.40E-43
Glyur000342s00013739.3	PF00999.16	Na_H_Exchanger	262	583	3.20E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.873
SRR1783600	control	7.037
SRR1783602	moderate drought stress	6.955
SRR1811619	moderate drought stress	6.781

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.120
DRR006520	Root Summer glycyrrhizin high producing strain	6.100
DRR006521	Root Winter glycyrrhizin high producing strain	6.468
DRR006522	Root Winter glycyrrhizin high producing strain	5.897
DRR006523	Root Summer glycyrrhizin low producing strain	6.608
DRR006524	Root Summer glycyrrhizin low producing strain	6.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.594
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.416

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.137
SRR2868004	Drought Stress (root)	23.807
SRR2967015	Control (root)	22.742

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.176
SRR9715740	Leaf	12.641
SRR9715741	Leaf	16.982
SRR9715739	Root	3.926
SRR9715742	Root	7.732
SRR9715743	Root	6.319

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.769
SRR8749028	MeJA induced 9h	8.469
SRR8749029	MeJA induced 9h	4.003
SRR8749030	Uninduced	5.986
SRR8749031	Uninduced	3.765
SRR8749032	Uninduced	2.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.876
SRR8400027	Control - Root	19.589