Gene detail

Gene detail information of Glyur000342s00013734

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02370.2	8.00E-102	SNARE associated Golgi protein family
NR	XP_004486411.1	0	PREDICTED: Golgi apparatus membrane protein TVP38-like isoform X1 [Cicer arietinum]
COG	YP_006448206.1	1.00E-17	hypothetical protein Desti_3284 [Desulfomonile tiedjei DSM 6799]
trEMBL	tr\|Q2HSS2\|Q2HSS2_MEDTR	0	F5O11.19, related {ECO:0000313\|EMBL:ABD32921.2}

Sequence

Transcript Sequence

>Glyur000342s00013734.1
AAAATTAATAATTACTACATAATTAATAATAAATAACGGGGGCAGTGTTTGGTTTGTTTGGAAGTTGGAAACGGAAACACTCGTAAAGGCAAAGGTTTTTTCTCATTTTGTTGCGTTGCGCGTTCAAGTTTCCTTTGTTGCCGCGTCCGGTGAACGGTTCCGTTTGAACGAACTCCTCCGCCTCACACGGTGGTCGCCGACTTACTCCGGCGACCGAGATTCCGTGGAGGCTAACTCGGTAACCTTTCGTTGTTTGCCTCAGGCTCAGCTCATTCATTACTGCACACTCCTCCTTCTTTTGTTGCTGCCCTCTGGCGTCTCAATGATGACACCAGAGCCATCAAGGGAGTTGGAGAAACTAGAAATCTCAGGTCATCATGTGAGGGGGAGTAGGGAATATGTTAGACTTGCCATATCTGATGAACCGAGGGCTGTTGAAACTGAAATGCTACAGCCTCAAGCAGAATCAAGAATTAAATCTTTCAGGTGGTGGATGAAAGCCTTTTTATGGTGCTTTGTCACTGTTATACTTGTTCTCGTTCTAGTGAAATGGGGAGTGCCATTTTTTTTTGAAAAGATTCTTTATCCGATGATGGAGTGGGAAGCAACTGCCTTTGGCCGTCCAGTACTTGCTCTTGTACTTGTTGCTTCTTTGGCTTTATTCCCAGTATTATTAATCCCTTCTGGCCCTTCCATGTGGTTGGCTGGGATGATTTTTGGTTATGGCCTTGGCTTTGTTATAATAATGGTTGGAACAACCATTGGGATGGTCCTTCCTTACCTAATTGGACTAAAGTTCCGCGACCGCATTCATCAATGGTTAAAGAAATGGCCCCAGAATGCTGCAATGATTAGGCTTGCTGGGGAAGGGAGCTGGTTCCATCAATTTCAAGTTGTTGCTCTGTTTCGAATTTCGCCTTTTCCCTATACTATATTCAATTATGCGGTAGTAGTGACAGATATGAAGTTTTGGCCCTACTTATGTGGATCAATAGCAGGAATGGTGCCAGAAGCTTTCATCTACATCTATAGTGGTCGATTAATAAGGACCTTGGCTGATGCACAGTACGGGAAGCACCACTTGACCACTGTGGAAATAGTGTACAACATTATTTCATTCATCATTGCTGTTGTTACCATTGTTGCCTTCACTGTTTATGCAAAAAGGACTCTTAATGAACTCAAAATAGCAGAGGCCAATGAGGAAGCTTCCCCTGTTTCTGGGAATGCTAGTAGTCCTGAGATGAATAAGGCTTCCCANTGAAATGTCTTCTTCCACTAACTCATCATGATTTTGTACATTTTATGTATCTAAAGTATGATTTAGGACCACTTCCTCTCTCCCCCTTCTTAGGCTCTTATTGTGTAATTACTGGAATCAGCATGTAGGATAGAAAAGCAAGAGCAGTTACTAACTCCCTTTCTCTCTAAGCCTATGCAAATCCACTAACGCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	136256	140122	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013734.1	PF09335.6	SNARE_assoc	119	239	4.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.250
SRR1783600	control	12.362
SRR1783602	moderate drought stress	12.307
SRR1811619	moderate drought stress	12.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.028
DRR006520	Root Summer glycyrrhizin high producing strain	7.995
DRR006521	Root Winter glycyrrhizin high producing strain	23.890
DRR006522	Root Winter glycyrrhizin high producing strain	23.611
DRR006523	Root Summer glycyrrhizin low producing strain	14.225
DRR006524	Root Summer glycyrrhizin low producing strain	14.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.306
SRR2868004	Drought Stress (root)	43.196
SRR2967015	Control (root)	33.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.502
SRR9715740	Leaf	21.346
SRR9715741	Leaf	33.155
SRR9715739	Root	36.231
SRR9715742	Root	26.732
SRR9715743	Root	27.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.972
SRR8749028	MeJA induced 9h	34.220
SRR8749029	MeJA induced 9h	36.283
SRR8749030	Uninduced	65.700
SRR8749031	Uninduced	109.726
SRR8749032	Uninduced	81.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.285
SRR8400027	Control - Root	31.310