Gene detail

Gene detail information of Glyur000342s00013731.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49720.1	0	glycosyl hydrolase 9A1
NR	XP_004486415.1	0	PREDICTED: endoglucanase 25-like [Cicer arietinum]
COG	YP_007159459.1	4.00E-66	Cellulase [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q38890\|GUN25_ARATH	0	Endoglucanase 25
trEMBL	tr\|V7BNG5\|V7BNG5_PHAVU	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}

Sequence

Transcript Sequence

>Glyur000342s00013731.1
ATGAGTATGTACGGTAGGGATCCGTGGGGTGGCCCACTGGAGATAAACGCCACTGACTCGGCCACNGACGAGGATCGGAGCCGGAACCTGCAGGAGCTGGACAGGGCGGCGCTGTCTCGGCCGTTGGACGAGACGCAGCAGAGCTGGCTGCTGGGTCCCACGGAGCAGAAGAAGAAGAAGAAGTACGTGGATCTGGGTTGCATCATCGTCAGCCGCAAGATCTTCGTCTGGACCGTCGGCACAATCCTCGTCTCCGCCGTCCTCGCCGGCTTCATCACCCTCATCGTCAAAACCCATAACAATGTATCTTGGAGGGGGAACTCGTGCCTGCAGGATGGGAAAGGTGAGGGTACCTCCTCTGCGATCAAGGATCTGATTGGTGGATACTATGATGCTGGGGATGCCATCAAGTTCCACTTCCCTAAAGCTTTCTCCATCACCATGCTCAGCTGGAGTGTCATTGAGTACAGTGCCAAGTATCAGGCTGCTGGGGAGCTTGACCATGTCAAGGAAATCATCAAATGGGGCACTGATTACTTCCTCAAGACCTTCAACAGCACTGCTGATACCATTTCCACCCTTGCTGCTCAGGTTGGGATTGGAGATACCTCTGGGGGGAGTACAACTNCCAATGATCACTANTGCTGGATGCGTCCGGAGGACATTGACTATGACAGGCCCGTCACTGAATGCCACAGTTGTTCCGATCTTGCCGCGGAGATGGCTGCTTCATTGGCTGCTGCATCCATTGTTTTCAAGGACAACAAAGCCTATTCCAAGAAACTTGTTCATGGTGCCACCACGCTCTTCAAGTTCTCCAGGGATCAGAGAGGCAGATACAGTGCTGGTAGTTCCGAGGCTTCGATATTCTACAATTCTACCAGCTACTGGGATGAGTTTGTTTGGGGAGGTGCTTGGATGTACTTTGCAACCGGAAACAACTCATACCTTAAGCTTGCCACTACTCCTGGCATTGCTAAGCATGCTGGTGCTTTCTGGGGAGGCCCTGATTATGGGGTACTGAGCTGGGATAACAAGCTTGCTGGTGCTCAGGTTCTTCTAAGTCGTTTGAGGTTGTTCTTGAGTCCTGGGTATCCATATGAAGAAATTTTAAGGACCTTCCACAATCAGACCAGCATAATCATGTGCTCCTACCTACCAGTTTTCACAAGCTTTAATAGAACCAAAGGAGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTGTCAATGCAGCCTTTTTGGCTGCCCTATACAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCGACCGATGTTCTCCGTGACTTTGCCAAGACTCAGATNGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTCGTAGGTTTTGGTAATCATTATCCAAAACATGTCCACCATAGAGGTGCATCTATACCAAAGAACAAGGTTAAATATAACTGTAAAGGTGGATGGAAATGGAGGGACACATCAAAGCCAAACCCAAATACAATTGTTGGTGCCATGGTTGCTGGTCCTGACAGGCATGATGGCTTCCACGATGTTCGTACAAACTACAACTACACAGAGCCAACCCTTGCTGGAAATGCTGGTTTAGTGGCAGCACTAGTGGCATTGTCAGGTGACAAGGACATGTCGATTGACAAAAATACCCTTTTCTCTGCTGTTCCCCCAATGTTTCCAACACCGCCACCACCTCCAGCACCATGGAAACCATAAGGTGCCACCGGCCACGCCATTCGTTATCTTTTTCCAGCAAGTACCCCAAATGACTTGAGTGCATTGATAGCTTCTGTTATTTTGTATCAACTGGAAGATCAAGGTAATTTTGAATACAAAAACCATGGAGAATTGGAAGCACTGGGGCTTGGCCTAGTGAATCTAGTTGGCTGGGACTAATGGCGACTCAAGATTAGCATTAAGAATTGATGATAAAGTGGTACTTGAGAGTGTCTTTTTTTTTTTTTGTGATATACGTAGTATATATGTATCAAAACCAAATCTTGTATTCTTTAAACATGAAAACTGAACAGCTTGTAATTGTTTGACAGTTTCATCTAATGTCGTTACAATTTTACTCTTGACTTTTTCTTTCATTTCTACCTGTTTTCTTATTAAACCTCTTTTCTTGTTGAGCCTGGGTTCTCCTTTCTTCATTCNATGCATGCACAAGCATAGTTGTAGCTGCTAGGAATCATCTTCCTTATGTAGCAGGTGGCGTGCCAGAAGTAACCTTGGCTTTACACACACACACACACACACAAAAGAACACATCACTCAAGAGTGTGTTTGGAAATGTATATTTGAGTCGATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	124340	128240	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013731.1	PF00759.14	Glyco_hydro_9	97	551	4.50E-133

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	273.796
SRR1783600	control	278.070
SRR1783602	moderate drought stress	322.153
SRR1811619	moderate drought stress	339.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	226.341
DRR006520	Root Summer glycyrrhizin high producing strain	225.286
DRR006521	Root Winter glycyrrhizin high producing strain	114.243
DRR006522	Root Winter glycyrrhizin high producing strain	111.415
DRR006523	Root Summer glycyrrhizin low producing strain	234.452
DRR006524	Root Summer glycyrrhizin low producing strain	236.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	75.689
DRR006526	Leaf Summer glycyrrhizin high producing strain	75.792

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	309.882
SRR2868004	Drought Stress (root)	297.681
SRR2967015	Control (root)	284.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.622
SRR9715740	Leaf	75.891
SRR9715741	Leaf	72.460
SRR9715739	Root	234.180
SRR9715742	Root	272.546
SRR9715743	Root	261.684

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	159.491
SRR8749028	MeJA induced 9h	215.561
SRR8749029	MeJA induced 9h	149.684
SRR8749030	Uninduced	124.676
SRR8749031	Uninduced	43.470
SRR8749032	Uninduced	67.021

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	356.463
SRR8400027	Control - Root	427.453