Gene detail

Gene detail information of Glyur000342s00013727

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49740.1	0	ferric reduction oxidase 7
NR	XP_004486416.1	0	PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Cicer arietinum]
COG	YP_001517464.1	4.00E-23	oxidoreductase [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q3KTM0\|FRO7_ARATH	0	Ferric reduction oxidase 7, chloroplastic (Precursor)
trEMBL	tr\|Q2HST1\|Q2HST1_MEDTR	0	Oxidoreductase/ferric-chelate reductase {ECO:0000313\|EMBL:AES64681.1}

Sequence

Transcript Sequence

>Glyur000342s00013727.1
CTCGTATTTTTATGGGGTCTTGTAGAGGAATCAGGTAACACAGTGGTGGTGGTGCATTGTGGGATAGTACCCTTTACGATTTTGAGCAATTTCTTGGTGTGGTGCTGCTTTTTCCCATGGAGAAAAACTCTATTGATTATAGTCCTTTGCTTTCTCCAAGTATTGCCAGAAAGACATCTCCTCTTGTGTCAGCTACCAAGTGGACTCTCAAGTCTTTGATTTACCTGATCTTCATTGGATGGGCGGGGTTCATTTTTCTGTTACCAGCAAAACCTGTGCATGACTTGTTTTCAAAATGGCTTAATTTCAGCAGTGGAACTCTCTTTGGAATCACAGGAAGCATTTTTCTGGTCCTCTGTGCTCCAGTTCTGATAATTGCATTCCTTGCCATTGCACACTTAATTGTATCTGNGGAGGATCAGCTTCCTGAGAAGAAGACTTTCAAATATCCAAGGTTTCGCCTATGGACCTTCCCTGTGCTTGTCAATGGACCATTTGGGGTTGTTTCTGCTACAGAGTTAATTGGGATTGTCATTTTTTCAGCTTATGTTATCGGGGCTGTCTATGCTTATACTATGCAGGCCCTTGTAGCTGCGTCTGACCAGTCATCTTTTAGAGTCAAGAGCATGTTCATGTTGGAGATTGTAGGACTTCGTTTGGGTTCAATCGGATTATATTGCTTGGGATTTTTATTTCTCCCAGTTTCAAGGGGATCTGTTCTTCTCCGCTTTATAGATATCCCTTTTGAACATGCTACAAGATATCACGTATGGCTAGGACACCTCACAATGGTGCTTTTTACTCTCCATGNACTCTTCTATGTAATTGCATGGGCTATGGATGGCCGCCTAGTGCAAGAATTAGTACAATGGAAAGATATTGGAGTTGCCAATCTCCCAGGAGTTATCAGCCTTCTAGCTGGTTTGTTGATGTGGGTGACCTCTCTTCCTGGAGTGCGGAAGTGGAACTTTGAGTTGTTTTTCTACACCCACCAATTATATGTAGTCTTTGTTGTCTTTTTGGCTTTGCATGTTGGAGACTTTATTTTCACTATGGCTGCTGGAGGAATATTTCTCTTTGTGCTTGATCGGTTTCTGAGGTTTTGCCAATCACGAAGGACGGTTAATGTAATCTCATCCAGGTGTCTTCCATGTGGCACTGTGGAACTGGTTCTGTCGAAACCTCAAAATCTGAGATACAATGCTCTAAGCTTCATTTTCCTTCAAGTCCGGGAGTTATCATGGCTTCAGTGGCATCCATTCAGTGTTTCTTCTAGCCCTTTGGATGGAAAGCATCACCTTGCTGTTCTCATAAAGGTTCTTGGCAAATGGACATCAAGGTTAAGGGACAGGATTACTGATGTTGATGTACCGAAAGATTCAACTGTACAGCCCCATACCGTAGTAACAGCCTCGGTTGAGGGGCCATATGGGCATGAAGTACCATACCACTTGATGTATGAAAACCTTGTATTAGTGGCTGGTGGTATTGGACTTTCACCCTTCCTTGCTATATTGAGCGATGTTCTCCACCGTGTGAGGGAGGGGAAACCCTGTCGACCGAGAAATATTTTAGTTGTTTGGGCGGTGAAAAAATCGAACGAGCTTCCGCTTCTTTCAACCATTGACATGGAAACAATCTGTCCATGCTTTTCTGATAAAGTAAATATTGATGTACATATTTACGTCACTCGAGAATCCGANCCTCCAGTGGAAGAGGGATACATTTACAAACCAATAAAATCTTCTCTNTGTCCTGTGCCTAGTGATTGTGGCATGTCTGTTTTGGTTGGTACAGGAGACAATTACTGGTCAGGATTATATGTCATCTCATCTACCTTTGGCTTTGTGATCTTACTTGCTTTGTTGAATATTTACTATATAAACCCGTATGGTGTATATAAATGGTGGTACAAAGGGCTACTATTTGTAATCTGCATGGTTGCAAGTGTTGTTATCTTTGGTGGTANAGTGGTTGGATTGTGGCATTTTTGGGAAAAGCAAAGTTCTCTGAGGGATAAGTCCAATGGCATCAAGGTTGATAAAATTGAGCAAAATGGCTCTGAGGATCCAAGTGAAGACAATATTGCAAAGTCAACTGTCATTCGTTATGAGACTTTTGAATTGATGTCAGAGAAATGGGGCCTTGTTGATGTGGGTGTTATAGTTTGTGGTCCTCCAACGCTTCAGTCAAGTGTTGCCCAAGAAATCAGGTCACATAGTTTGACAAGACAACCCCACCATCCCATCTTCCATTTCCACAGTCACAGCTTTGATCTCTAGCTCCTCCTAATGGAAAGATGGAAGATGTGCCTTCTCTAATGAAAAAGCATGTATATTGTTATATTGTATATATAGAAGCAATCTAATTCTGCAATCCATTGCAGGATAAAGTACTATAATCCTTGAAAGGATTCTATAAAAATGAACTCTAAGTGGGATAATATCTAATACTCCTTATGTGAATATATTATCACTATACATATCCATGCACAATTTTAGCTACAGCGTTCTATTCTCTTATTTTTCTTTCTTTTTCCATATTATTTTAGTTGCTATATATGCTTACAAATNTGCAGACACATAATTGTGTAATCAAGTGGCGGAAAGAGGGCGTAGGTGTATGCAACTTTGTGCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	111431	116537	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013727.1	PF01794.14	Ferric_reduct	181	302	1.90E-17
Glyur000342s00013727.1	PF08022.7	FAD_binding_8	339	440	1.70E-17
Glyur000342s00013727.1	PF08030.7	NAD_binding_6	448	529	5.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.265
SRR1783600	control	2.260
SRR1783602	moderate drought stress	3.086
SRR1811619	moderate drought stress	2.987

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.685
DRR006520	Root Summer glycyrrhizin high producing strain	2.707
DRR006521	Root Winter glycyrrhizin high producing strain	0.497
DRR006522	Root Winter glycyrrhizin high producing strain	0.475
DRR006523	Root Summer glycyrrhizin low producing strain	3.285
DRR006524	Root Summer glycyrrhizin low producing strain	3.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	85.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.114
SRR2868004	Drought Stress (root)	8.169
SRR2967015	Control (root)	4.070

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	142.275
SRR9715740	Leaf	239.186
SRR9715741	Leaf	157.186
SRR9715739	Root	3.920
SRR9715742	Root	6.658
SRR9715743	Root	6.827

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.626
SRR8749028	MeJA induced 9h	1.613
SRR8749029	MeJA induced 9h	0.710
SRR8749030	Uninduced	3.745
SRR8749031	Uninduced	3.366
SRR8749032	Uninduced	6.436

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.069
SRR8400027	Control - Root	9.593