Gene detail

Gene detail information of Glyur000342s00013725

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49760.1	2.00E-162	Leucine-rich repeat protein kinase family protein
NR	XP_004486417.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Cicer arietinum]
COG	YP_001192956.1	3.00E-33	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	5.00E-157	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|G7IFT4\|G7IFT4_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES64685.2}

Sequence

Transcript Sequence

>Glyur000342s00013725.1
ATGAACAGCCCATGGCTGCACACCGCCTTCTCCAATCGAAATCGAAATCGAAATGATGACTCTGTTCCCATTCCCAGGGGAAGTTCCATCTCCAACCATGTTGATGTTGCCGCCGTTGACCACCCACTACGACAACTTTCCATAAAACTTGAGCAGAGGGGCAAGTCAACTCTGAGGCAAGTTGACTTCTTCCGTACTTATGGTGGCCAGATAATGACATTTAAGGTTGTCTGCAGGTGCAAGATAGTTAGGTTGGTCATGGGTGAAAGAATTCTTGTATTCCTACTACTCCTTTTCAGTTATTTGTTGGTTGTGATAGCAAAAACAGCAAATGAGGATTACCTTGCTCTTCTGACTTTGAAGTATGAGTGGCAGAATACGCCACCTAATTGGGTGGGCTCAGATCCTTGTGGTGATCATTGGGATGGCATTGAGTGCTCCAATTCACGCATTACCGCCATGTTATTGGCAAGCATGGACTTGTCTGGCCAGCTTTCTGCAGATATTGGATTACTATCTGAATTGCAGATTCTGGATCTGTCTTACAATAACAATTTAAAAGGACCGCTTCCCCGTGAAATTGGAAGCTTGAAAAAGCTGAGAAACTTACTTCTTATTAATTGTGGTTTCACCGGTCCTATCCCAGATACAATAGGAAATCTACAACGGCTTGTCTTCCTATCTTTAAATTCTAATAGATTTACTGGGCGAATTCCACCTGCTATTGGTAATCTCTCAAATATTCATTGGCTAGACTTAGCAGAAAACCAGCTTAGTGGACCCATCCCAATATCTAATGGAACTACTCCTGGTCTTGATATGCTGCACAAAACAAAACACTTTCATTTTGGGAAGAATAAGCTTTCAGGGAATATTCCGCCTGAACTTTTTAGCTCTGAAATGTCCCTGATTCATGTGCTTTTTGAAAGCAACCAACTTAGAGGCAGCATTCCAGATACACTTGGACTTGTCCAGAAACTCGAAGCGGTGCGCTTTGATGGTAATATTTTAAGTGGACCTTTGCCTCAGAACATCAACAACCTTACAAATGTTAGGCAATTGTTCCTCTCCAACAATCACCTATCTGGTCCCCTGCCAAACCTTACCGGAATGGATGTCCTCAGCTACCTGGATATGAGCAATAATAGTTTTGATGCATCAAACTTTCCACCATGGTTATCAACTCTACAGTCTCTAACAACAATAATGATGGAGCATACGCAACTTCAAGGAGAAATTCCTGTTTCTTTGTTCAGCCTGGTACAGCTACAGACAGTGGTGCTGAAAGACAACCTGATGAATGGCACTTTAGATATTGGCACAGCCATTAGTAACCAACTGGGACTCCTTGATTTGCAGAATAATTTCATTGAAGAATTCAATCCACAAGTTGATGTCTCTAAAGTGGAGATAATACTTGTGAATAACCCAGTTTGCCAAGAAACAGGAGTTGTAAGGACTTACTGCTCCATTTCAAAAGACAATGATTCCTACACAACGCCGCCAAATAACTGCGTGCCAGTTGCCTGCAGCACAAATCAGATATTAAGCCCCAACTGCAAATGTGCATACCCATATACAGGAACATTAACTCTCAGAGCTTCTTCCTTCTCAGACTTGGGAAACAAGTCTGTCTTTGGAAGCCTGGAGTTTTCTCTGATGCAGTCTTTTCGACTTCATGACAAACCCGTGGATTCAGTTTCTTTGAGCAACCCAAGGATGAATGCATATCAGTATCTTGATGTGACTTTAAGAATGTTTCCATCAGGTCAAGATCATTTCAATAGAACTGGGATTTCTGGTATAGCCTTTCTGTTTAGCAACCAGACATATAAGCCTCCTGAAATGTTTGGACCAATTTATTTTCTTGCTGATAAGTATGAAAATTATATGAATGATTCAGTATTAGAAGAAGGTCCAGTGACTTCCAGTAGTAAATCTTCAAACGTTGGCATCATAGCTGGAGCTGCTGGTGGTGGTGGTGGTGTCCTGCTGCTGTTATTACTCCTTGCAATTGTTTATGCTTCCCGCCAAAAGAAAATGGCAAAGAAAGCAACTAGGAAAAGCAATCTTTTTGAACAATGGGATCCGGATGAGAGTGATAGTAGCATCCCACAGTTAAAAGGAGCAAGGCGCTTCAGTTTTGAAGAGATACAAAACTACACCAAAAACTTTTCACAAGGCAGTTATATCGGATCTGGGGGTTACGGGAAGGTATTGAATCAATCCAGGGGACTGGATTATCTGCACGAACTTGCCAATCCTCCCATCATACATAGGGACATCAAATCCACTAACATTTTATTGGATGAACGCTTGAATGCTAAAGTATCTGATTTTGGTCTCTCCAAGCCTTTGGGTGACGGTGGAAAAGGTTATGTTACCACTCAAGTCAAAGGAACAATGGGCTATTTGGATCCAGAGTATTACATGACTCAGCAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGCTAATGTTGGAGTTGATAACCGCTAGAAGGCCAATAGAGAGAGGGAAATATATTGTGAAAGTGGTTAAGAGTGCTATTGACAAGACAAAAGACTTTTATGGTCTTAAGGAAATACTTGATCCAGTCATTGATTTGGGGACAACAGTGCACGGTTTNGAGAAGTTTGTGGATCTTGCATTGCAATGTGTTGAGGAGTCAAGTTCTAACAGGCCTTCAATGAATCATGTGGTGAAAGAAATTGAAAACATGTTGCAGTTGGCTGGCACAAACCCAAATGCCGAATCAGCATCCACTTCATCTAGTTATGTAATAGCACAAGAAGATACAAATGATTTTAGAGTTATAATGTCTCTAAGGGATTCCTGGCAGTGCTCAAGTCCCAATTGGGTGGGTTCAGATCCTTGCAATGGTTGGGATCTCTCGTACAATAGGGGACTAACAGGACCGCTTCCACAAGAAATTGGAAATTTGAAGAAGCTATCAAGATTGTGGCTTGTTAGTTGTGGCTTTTCTGGTCGTATTCCAGATGAAATAGGATCTCTNCAACAGCTTGTTTTCTTATCTTTAAACTCCAACAGCTTTGTTGGACCAATTCCCCCTTCTATTGGCAATCTATCAAATCTTACTTGGCTAGATTTAACTGACAATCACCTTGATGGATCCATCCCAGTATCTAGTGGCACTACCCCTGGTCTTGATATGCTGCTCAACACACAGCACTTTCATCTTGGGAATAATAAGCTCTCAGGAGAAATTCCTTCTCAACTTTTTAGCTCTGAAATGGCTATGATACACTTGATTCTTGAGAGCAATAAACTAACTGGAAGGATTCCAGATACGCTTGGACTTGTTAAGAACCTGACGGTGGTGCGTTTTGAAAACAATAAATTGCAAGGATCTATGCCTCAGAGCCTCAACAACCTTACAAATGTTACAGACCTGTTGTTGTCCAACAATATGCTGGAAGGCTTGCTACCAAACCTTACTGGGATGAACTCCCTAGAATACTTGGATTTGAGCAACAACAGCTTTGATCAGTCAGGTTTTCCAACATGGCCTTCAGATATGAAAAATTTAACAACACTACATATGGAGAGTGTGAACCTTATTGGGAAAGTTCCTGTTTCTCTGTTTAGCCTTGCCAAGTTACAAAACGTACTTGTGTACAACCCAATTTGTCAAGAAAATGGAGCTACAGGGACTTACTGCACCATGCACAATATCTTAGACACAAAATCACAAAACAAGCACTGTGTGTCTCAAGTTTGCAGTTCAGATCAGACTCTGAGTCCCAATTGCAAGTGTGCATATCCATATAAAGGAACTCTAACATTCAGAGCACCTTCCGGGTTTGAGTGGAGGAATGCAACTTCCGTGGAGGAAGATCTTTTGAATGTGCTTATGCTTTCTGCCAGAAGAGAAGGGCAGAAAGAGCAATTTCCAGAAGCAATCCTTTTGGTTTACCGGGGAACACTTCCCAGTGGACAGATGATAGCCATAAAACGAGCTCATAAAGAATCAAAGCAGGGAGCTCTAGAATTTAAAGCTGAGATTGAACTGCTTTCAAGGGTCCACCACAAGAATCTGGTGAGCCTTGTGGGGTTCTGCTTCNAACGGGAAGAACAAATGCTGGTGTATGAGTTTGTTCCAAATGGAACTATGAAGGATACTCGCTCAGGGAAATCAGGAATTGTGTTGAGCTGGAGCAAAAGGCTAAAAGTAGCCNTTAGTGCTGCCAGCGGTTTGGCTTNTCTCCATGAACATGCAGATCCTCCTATTATGCACAGGGACATCAAATCAAGCAACATTTTGCTGGATGAGAACTTTAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAGCCTATCTTAGATGATGAAAAANATCATGTTACAACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCGGATTATTTTAATAATCATCGGTTGACCGAAAAGAGTGATGTTTATAGTTTTGGAGTGATAATGGTGGAGCTGATAACTGCAAGAAAGCCACTAGAACGAGGGAAATACATTGTGAAAGTGGTCAGGAATGCAATTGATGAGACTAAAGACTTGTATGGTCTTCACGGAATTATCGACCCAGCCATCATCAGTTCAAGATCAACATTGAAGGGTTTTGAAAAGTTTGTGGACCTTGCAATGAAGTGTCTTGAAGAGTCTGGAGCTGACAGGCCTACAATGAGTGATGTGGTTAAAGAAATTGAAGAAATCTTTCAGTCTGCTGGTTTAAACCCAACATCTGATCAATCAGCAGCATCCACTTCATCTAGTTTNAAATATTGCAATGTGAGCACAGGGAGTCCCCACGATCTTTACAGCAATGAGTTCTTTGATACAAGCGCAGAACATTTACATCCATAA

Protein Sequence

>Glyur000342s00013725.1
MNSPWLHTAFSNRNRNRNDDSVPIPRGSSISNHVDVAAVDHPLRQLSIKLEQRGKSTLRQVDFFRTYGGQIMTFKVVCRCKIVRLVMGERILVFLLLLFSYLLVVIAKTANEDYLALLTLKYEWQNTPPNWVGSDPCGDHWDGIECSNSRITAMLLASMDLSGQLSADIGLLSELQILDLSYNNNLKGPLPREIGSLKKLRNLLLINCGFTGPIPDTIGNLQRLVFLSLNSNRFTGRIPPAIGNLSNIHWLDLAENQLSGPIPISNGTTPGLDMLHKTKHFHFGKNKLSGNIPPELFSSEMSLIHVLFESNQLRGSIPDTLGLVQKLEAVRFDGNILSGPLPQNINNLTNVRQLFLSNNHLSGPLPNLTGMDVLSYLDMSNNSFDASNFPPWLSTLQSLTTIMMEHTQLQGEIPVSLFSLVQLQTVVLKDNLMNGTLDIGTAISNQLGLLDLQNNFIEEFNPQVDVSKVEIILVNNPVCQETGVVRTYCSISKDNDSYTTPPNNCVPVACSTNQILSPNCKCAYPYTGTLTLRASSFSDLGNKSVFGSLEFSLMQSFRLHDKPVDSVSLSNPRMNAYQYLDVTLRMFPSGQDHFNRTGISGIAFLFSNQTYKPPEMFGPIYFLADKYENYMNDSVLEEGPVTSSSKSSNVGIIAGAAGGGGGVLLLLLLLAIVYASRQKKMAKKATRKSNLFEQWDPDESDSSIPQLKGARRFSFEEIQNYTKNFSQGSYIGSGGYGKVLNQSRGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGGKGYVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKSAIDKTKDFYGLKEILDPVIDLGTTVHGXEKFVDLALQCVEESSSNRPSMNHVVKEIENMLQLAGTNPNAESASTSSSYVIAQEDTNDFRVIMSLRDSWQCSSPNWVGSDPCNGWDLSYNRGLTGPLPQEIGNLKKLSRLWLVSCGFSGRIPDEIGSLQQLVFLSLNSNSFVGPIPPSIGNLSNLTWLDLTDNHLDGSIPVSSGTTPGLDMLLNTQHFHLGNNKLSGEIPSQLFSSEMAMIHLILESNKLTGRIPDTLGLVKNLTVVRFENNKLQGSMPQSLNNLTNVTDLLLSNNMLEGLLPNLTGMNSLEYLDLSNNSFDQSGFPTWPSDMKNLTTLHMESVNLIGKVPVSLFSLAKLQNVLVYNPICQENGATGTYCTMHNILDTKSQNKHCVSQVCSSDQTLSPNCKCAYPYKGTLTFRAPSGFEWRNATSVEEDLLNVLMLSARREGQKEQFPEAILLVYRGTLPSGQMIAIKRAHKESKQGALEFKAEIELLSRVHHKNLVSLVGFCFXREEQMLVYEFVPNGTMKDTRSGKSGIVLSWSKRLKVAXSAASGLAXLHEHADPPIMHRDIKSSNILLDENFNAKVADFGLSKPILDDEKXHVTTQVKGTMGYLDPDYFNNHRLTEKSDVYSFGVIMVELITARKPLERGKYIVKVVRNAIDETKDLYGLHGIIDPAIISSRSTLKGFEKFVDLAMKCLEESGADRPTMSDVVKEIEEIFQSAGLNPTSDQSAASTSSSXKYCNVSTGSPHDLYSNEFFDTSAEHLHP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	81566	103671	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013725.1	PF08263.7	LRRNT_2	110	147	1.60E-05
Glyur000342s00013725.1	PF00560.28	LRR_1	175	197	0.72
Glyur000342s00013725.1	PF00069.20	Pkinase	743	904	1.10E-25
Glyur000342s00013725.1	PF08263.7	LRRNT_2	936	965	21
Glyur000342s00013725.1	PF00560.28	LRR_1	1159	1175	1.2
Glyur000342s00013725.1	PF07714.12	Pkinase_Tyr	1318	1568	1.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.441
SRR1783600	control	0.427
SRR1783602	moderate drought stress	0.132
SRR1811619	moderate drought stress	0.136

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.008
DRR006522	Root Winter glycyrrhizin high producing strain	0.017
DRR006523	Root Summer glycyrrhizin low producing strain	0.111
DRR006524	Root Summer glycyrrhizin low producing strain	0.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.951
SRR2868004	Drought Stress (root)	42.988
SRR2967015	Control (root)	54.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.895
SRR9715740	Leaf	13.134
SRR9715741	Leaf	8.006
SRR9715739	Root	0.084
SRR9715742	Root	0.159
SRR9715743	Root	0.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.136
SRR8749028	MeJA induced 9h	0.062
SRR8749029	MeJA induced 9h	0.107
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.071
SRR8400027	Control - Root	11.797