Gene detail

Gene detail information of Glyur000342s00013721

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59880.1	6.00E-63	actin depolymerizing factor 3
NR	NP_001236448.1	1.80E-91	uncharacterized protein LOC100305514 [Glycine max]
Swissprot	tr\|Q9FVI1\|ADF2_PETHY	1.00E-82	Actin-depolymerizing factor 2
trEMBL	tr\|C6SVF1\|C6SVF1_SOYBN	7.00E-92	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G13141.1}

Sequence

Transcript Sequence

>Glyur000342s00013721.1
GTGGAACACGGTACGTATGGATACTTTATGAAGAGGTGCACCGCCCATTGGGCCATTGAGAAGACACGCGCCGTGGATATTAATAACTTTTTTGTCACGCTCCACCACACACACCACCTTTTTCCCCTTCACAAATTCTCATTCCCCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTGCGAACCCTCGATCGAAACAAACACTCCTATATCTCCTCCACAACCATCGCTCACTCATCTCCAACAACCGCAACAAACTCATGCATCAGGTATGGCAGTCCACGATGACTGCAAGCTAAGGTTTTTGGAGCTCAAGGCAAAGAGGACATACCGGTTCATAGTTTATAAGATTGAGGAGAATCAGAAGCAAGTCATTGTGGAGAAGCTTGGTGAGCCAGCCCAAGGCTATGAAGATTTCACTGCTAGCCTTCCTGCTGATGAGTGTCGTTATGCTGTTTATGATTTTGAGTATCTGACAGAAGGGAATGTCCCCAAAAGCAGAATTTTTTTCATTGCATGGTCGCCTGATACATCAAGGGTCAGAAGCAAGATGATTTATGCAAGCTCCAAAGACAGATTCAAGAGGGAGCTGGATGGAATTCAAGTAGAGTTGCAAGCAACTGATCCTACTGAAATGGGTCTTGATGTGTTCAAAAGCCGTGCCAACTAAATGACTATGAATATTAGGCTTTCTGGTGGGGAGCCTCCCCTCAAGCCTTAGTTACTCATATTGAAACTTCCATAGTTTGTGGGATGGACAACTTGGCTAGTTATGGTCTCAAACTCTCAATTTTCCAAGTTGTGGTATAAAGTNTATTGCACCTTCGACAGGCTTCTCTTATTCCAGTGTATTTTATGATGATTTGTGATTTATACAGCCTTTGTGTTTGAGTGGCATTTTAGCCNTCGTATCCTTACTAGTTGAATTTGTAACTGTTTTGTGTGATGATCAGACAACAAATGGGGTTCACTTTTTTCAATATTGACACTCGTCATTCGCTAATATGCCTTACGACTTCATTTGTCTGATAGAGAGTCTTTTTTTTTTTTGGGTGTGGATATTGAAAGGCCTTCTGTTCATGCAAACTCTTTTTTTTTTATTTGGTGTAGTGAGATCCTATTCTATTGGTTGGATGGTTTTTACTCGAAACCAGAGTGCTTCATTTATCGCATATAAGTGGTTTATGGTCATGCATTGTGAGACTNGCATGAACTTGTTGAAGAACGCTTTTAGTTATTGTTCCATCATTTCATTTGCATGTTTATTTAAGGATGACTTGTTCTGATTGGGAGGAGAATTACTGGTCATTATGACACTAGCATGCTTCTAGGTTCGTGCTTAATGGATCTATTCCTTNGTGACTGGTTCGGTAAGAGCTTTAGTGCGCTTCATGTGCTCAAGCTGAAGTCTTGCTCCATAATGGGTCTGACTCCTAGTTTACCTGGGGCTTGGGGTTTGACTGGGTTGAACCGTTGAAGTCTTTGTTCTTTTTGGGGAATAGTCTCACNGATAGAATCCCATCAATTCTATGATTTTTATGTGGGCTTTCTGTTCTTGATGCTAACCAGAACACACAATCATAGACCGTTNGGAAATGTTCTATGACGCCGCAGTGGATGGCTGGGTTTCAGAAAATTTGGGTGTTAGGATGTTTGGACTTTGTGGGATGAATTGAGAGTTGAATGTGTGAACAAGGAGTGTTGGGTGGAGGAAGAAGGAAGGAGAAGAACGGTTGCCTCGTGTTGTGTGGCGATCGCATCACCGCACCAAAGCTTTGGCAGAAGGAAGAGGGGAAAGTGGATGAAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	65222	68356	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030042 actin filament depolymerization

cellular_component

GO:0005622 intracellular

GO:0015629 actin cytoskeleton

molecular_function
GO:0003779 actin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013721.1	PF00241.15	Cofilin_ADF	5	131	4.20E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.186
SRR1783600	control	70.818
SRR1783602	moderate drought stress	45.495
SRR1811619	moderate drought stress	45.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	167.014
DRR006520	Root Summer glycyrrhizin high producing strain	165.383
DRR006521	Root Winter glycyrrhizin high producing strain	112.044
DRR006522	Root Winter glycyrrhizin high producing strain	109.159
DRR006523	Root Summer glycyrrhizin low producing strain	125.167
DRR006524	Root Summer glycyrrhizin low producing strain	123.659
DRR006525	Leaf Summer glycyrrhizin high producing strain	80.197
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	333.465
SRR2868004	Drought Stress (root)	268.373
SRR2967015	Control (root)	246.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	183.563
SRR9715740	Leaf	203.943
SRR9715741	Leaf	205.383
SRR9715739	Root	201.731
SRR9715742	Root	169.964
SRR9715743	Root	172.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	178.099
SRR8749028	MeJA induced 9h	137.112
SRR8749029	MeJA induced 9h	132.089
SRR8749030	Uninduced	90.271
SRR8749031	Uninduced	62.046
SRR8749032	Uninduced	71.672

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	258.391
SRR8400027	Control - Root	241.210