Gene detail information of Glyur000342s00013719 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60970.1 | 2.00E-63 | SNARE-like superfamily protein |
| NR | XP_004486423.1 | 6.01E-117 | PREDICTED: coatomer subunit zeta-2-like [Cicer arietinum] |
| Swissprot | tr|Q6Z844|COPZ2_ORYSJ | 8.00E-100 | Coatomer subunit zeta-2 |
| trEMBL | tr|V7BR48|V7BR48_PHAVU | 5.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:ESW19525.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00342 | 48186 | 51045 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000342s00013719.1 | PF01217.15 | Clat_adaptor_s | 12 | 150 | 3.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.685 |
| SRR1783600 | control | 71.652 |
| SRR1783602 | moderate drought stress | 40.663 |
| SRR1811619 | moderate drought stress | 40.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 86.166 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 84.946 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.999 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.585 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.551 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.484 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 163.737 |
| SRR2868004 | Drought Stress (root) | 130.674 |
| SRR2967015 | Control (root) | 121.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.075 |
| SRR9715740 | Leaf | 58.851 |
| SRR9715741 | Leaf | 70.670 |
| SRR9715739 | Root | 34.640 |
| SRR9715742 | Root | 43.712 |
| SRR9715743 | Root | 42.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 107.103 |
| SRR8749028 | MeJA induced 9h | 62.780 |
| SRR8749029 | MeJA induced 9h | 64.619 |
| SRR8749030 | Uninduced | 42.388 |
| SRR8749031 | Uninduced | 24.897 |
| SRR8749032 | Uninduced | 31.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 151.849 |
| SRR8400027 | Control - Root | 152.168 |