Gene detail

Gene detail information of Glyur000342s00013718

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29820.2	0	Magnesium transporter CorA-like family protein
NR	XP_004486424.1	0	PREDICTED: zinc transport protein ZntB-like [Cicer arietinum]
COG	YP_944135.1	6.00E-12	Mg2+ transporter protein, CorA family protein [Psychromonas ingrahamii 37]
trEMBL	tr\|K7MB13\|K7MB13_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G13200.2}

Sequence

Transcript Sequence

>Glyur000342s00013718.1
CTGTGTTGGCTTCATGAAGGGCAGAAAATGAGTGATACAGAAGATCAATCACATTCCTCAGGANCAAAGAAGAAACCAGAAAGCTATAAAAATTATCATGGTAGAGATCCCAATCCTGGAAANAACCTTTGGACAGATGGACTTATCTGCGCTTTTGAATTTGTTCAAGGACAGAAAAGATCAGTTAAGCCAAGGTTTGCAACAAAGATCACAAACAGACAACATTTTGATAGCGAATATTCAAAGATGCGTGTCCCTTCAAATGGTTTAATGGAGGCTTCTCCTACGAGATTAGATAAAAAGTTCTCACATCCTTCATCTGTAAATGTCTCAAGGGACAGTATATTTGGTGATTCCAATGATGACAAAGAGGGCCAGGTCCTTCAGGCTGGCCAATCTAATGCCCCNGTAAAGTATGAGGGTGATCATTGGGTACCAATTGGATGGGCCAGAATTTCAGAACTTGTCCAAGCAGTTCAGGTTGATGAAGTCTGGTCTTCTCATCNATTTGAATTTGAGGATTCTGAAGATGATTTCACTGTAGCAGATTTGGCAGCTCCCTATTGGGAGCGTCCAGCTGGGCCTATATGGTGGTGCCATGTTTCTGCAGGTCANCCGGCTGTTGAGGCTTGGCTCGGCAATGCTCAATGGCTACACCCTGCAGTTAGTTTAGCTTTGAGAGATGAAAGTAGACTTATAAGTGAGCGGATGAAACACCTTCTCTACGAGGTTCCAGTCAGAGTTGCAGGAGGGCTGTTATTTGAGCTCTTGGGACAATCAGCTGGTGATCCTCTTGTTGAAGAAGATGATATTCCAATTGTGCTTAGGTCTTGGCAAGCACAAAACTTCCTAGTAACTGTAATGCATGTAAANGTTTCAGTGTCGAGGATAAATGTTCTGGGTATAGCAGAAGTTCAGGAGCTTCTTTCTGCTGGAGGATATAATGTGCCAAAAACAGTGCATGAAGTTATAGCACAGCTTGCTTCCCGTCTCTCACGCTGGGATGACAGGTTATTCCGTAAATCTATATTTGGGGCAGCAGATGAGATTGAATTGAAGTTTATGAACAGGCGAAACCATGAAGATTTGAATCTTTTTATTATAATTTTAAATCAAGAAATCAGAAAGCTATCAAGACAGGTTATAAGAGTGAAGTGGTCACTCCATGCAAGAGATGAGATTGTCTTTGAGCTTCTCCAACATCTGAAAGGAAATGGAACAAGAAGCTTGTTAGAGGGAATAAAAAAGAGCACAAGGGAAATGATTGAAGAGCAAGAAGCAGTTCGTGGCCGCTTGTTTACCATTCAAGATGTTATGCAGAGCACTGTTCGAGCTTGGTTGCAGGATAGAAGCCTTAGGGTGACCCATAATTTAGCTGTATTTGGTGGTGTCGGNGTTGTCCTCACCATCGTTACCGGGTTATTCGGCATCAACGTTGATGGAATACCTGGGGCAGAAAACACACCATATGCATTTGGTGTCTTCACAGCCATCCTCATCTTTTTAGGAGCAGTGCTGATTGCAGTTGGACTGATTTACCTTGGGCTGAAAAAACCCATTGTTGAGGAACAGGTTGAAGTTAGGAAGCTTGAGCTGCAAGAGTTGGTGAAGATGTTTCAGCATGAAGCAGAGACTCATGCCCAAGTCCGGAAAAATGTTTCACGGAATAACTTACCTCCTACAGCTGGTGATGCTTTCCATAGTGATGCAGACTATCTTCTCATACAATAGAGATATATTGTTAGTTGTCATTATGCTTTAATTTTTGTTGGCATGAATTGAAGTTGAATTAGCATGCCGAAGTTAAAGCATGAATTTAGAGAACACTGCTATTTACTTATTCCTTTTTTTTTTTTGGTCGAAACTATTTACTTATTCCTGAGCTATGGTGAATTTGGGGAATCAGCAACTGTGGCTGAGGGGAACATGACATCNGTGATTACAAGCTGATAGCTTCTTCAGGACATTCACTGCCCTCAAAGTAGGACCAAATGTAATTTTCCTTTCCTTCCATCGGTTGTTCNCATCGAGAAAAGGCATCTTTGAAGGTGTCAAAAGATAAATCAAACGAGCACTATATAGATTAAGGGGGCATTTGCAAGATTTATTTAGGATTGTCTTATGACATAAACATTCATGCATTCATGCATTCATGCAAGTGTTAGTTATTTTTAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	42848	47491	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013718.1	PF01544.13	CorA	372	517	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.892
SRR1783600	control	6.888
SRR1783602	moderate drought stress	6.951
SRR1811619	moderate drought stress	6.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.874
DRR006520	Root Summer glycyrrhizin high producing strain	11.251
DRR006521	Root Winter glycyrrhizin high producing strain	2.970
DRR006522	Root Winter glycyrrhizin high producing strain	2.691
DRR006523	Root Summer glycyrrhizin low producing strain	11.442
DRR006524	Root Summer glycyrrhizin low producing strain	11.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.276
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.700
SRR2868004	Drought Stress (root)	5.407
SRR2967015	Control (root)	4.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.211
SRR9715740	Leaf	7.372
SRR9715741	Leaf	7.936
SRR9715739	Root	1.981
SRR9715742	Root	8.335
SRR9715743	Root	7.370

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.628
SRR8749028	MeJA induced 9h	3.510
SRR8749029	MeJA induced 9h	2.414
SRR8749030	Uninduced	0.673
SRR8749031	Uninduced	0.230
SRR8749032	Uninduced	0.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.843
SRR8400027	Control - Root	9.589