Gene detail

Gene detail information of Glyur000342s00013716

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29370.1	2.00E-136	Kinase-related protein of unknown function (DUF1296)
NR	XP_006586817.1	0	PREDICTED: cell wall protein AWA1-like isoform X2 [Glycine max]
trEMBL	tr\|K7MB16\|K7MB16_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G13211.2}

Sequence

Transcript Sequence

>Glyur000342s00013716.1
AAAAAGTTAAATTGGTAGACACAGAGAAAAGGAGTGGGGAGATAGTGAGAACTGAGAAGGAGTTTTCGCTTTTCGGGTACAAACTGCAAAGCATAAGCGAGCTAAAGAGGTTTGTTCTTGGTTGTTGTTGGCGCGGCAGAACCCTAGCGAGCACGGTGGTGTTGCGTGTGTGTGTGTGTGAGAGAGAAAGAGGATGAGCGGGAAGGGCGGTGGGAGCTACAACAACGGCGGTGGCAAGGGGTCGCCGGGGNCGACGATTCCGGCGTCGTCGAGGAAGGTGGTGCAGAGCTTGAAGGAGATTGTCACCAATTTCCCCGACCACGAGATCTACGCCATGCTCAGGGACTGTAACATGGACCCTAACGAAGCTGTCAGTCGCCTCCTCTCTCAAGATCCTTTTCATGAGGTGAAGAGCAAGCGAGAGAAGAAAAAAGAGAATAAGGACCCAACAGATTCCAGGTCTCGTGGGAGTGGGACAAGTAACACAACTAGCCGTGGTGGTGGACGCGGTGGCATGGATCGGGGTGGTGGACGCGGTGCCACCAACCAATTCAGTAGTAGTGACTCTGGTCTGCTGGGAAAACCTGTATACAAGAAGGAAAATGGAATCCTTGCTTATGGAGGTTCGACATCTTCCACATCTAGTGTGCTGGGAAATAATGTGAACAGGCAACCACCACCCCACAGTGATTCTGGGGCTACAGAAAAAACATTTACTATAGGCATCNGTGATGGACTATCTTCATCATCACAATATGCTGGATTGCAATCTGCATGGATGGGGAATGTGGGTCAAGTATCAATGGCTGACATTGTGAAGAGGGGTAGGCCACAGGCCAAGGAANCCATGCATAATTCTTCCTTCCACAGTGCTAATTATCAGAATGGTTTGATGCCTTCAGCAGCACCAGATCACAATTTGCATTTATTGCAAGGTCATGCTTCCAAGGTTTCAGAGATGAATACTGATCAAGGCCATGCTATTAGCCACAANGTTCCACAGAATGATGAATGGCCTTCTATTGAGAACCAACATGATGTCAGAGTGTACACTGATGCCCATGCAAATTCTGAGTACTATGCAAACTCATCGAGCTTTTCTGAAGCTTATTGGCAGAAGACTCACTTAGACGAACATGTAGCTGAAGATGGTTTTGTTGAGAATGCAGATGATGTCGGGTCTGCTTCTGTATCTGCTAAAAGCACATCAGAGGATAGCACAGGAGCTGAAGATGGTGTTTCATCAGTTGCTGCAAACTTAGAGCAGCTAAATTTACAGAGAGATGATCNGGGGACGGAACCAAAGGAGGACAATCCTTCTGTAGTAATTCCGAGTCACCTACAACTCCATACTTCAGAATGCTTGAATCTGAGCTTTGGAAGATTTGGGTCTCAAAACACTGCCCCCCTTTCTCGATCTGGGTCATATNCATCGAGGCCCTTGAAAAGCGACTTGGAGGATACATCTGGCGCAACTGATGTTTCTGCAACTGGATCATCGGATGCTAGAAATCCTGACTATTATGGAGAGGAGCATCATACAACTACCTCCGATAGAAATTTAGTTCATGGAACTGGTGTGAGTGCTGGGACTTATGAACATTCTTCCATTTCACAGCNAGAAGATTTAAAACCGGAACAACCTGAAACTGCTCAGGAAAATCAATATTCATTTCCTTCATCTTCACATGGGTTTACTTATGAAAATGCCCATCAACCAGATGTCACATTGCCTCATTCCGAGACAAGCTCACATATGCAGAATCTTGCTCCCTTCTCTAGTGTAATGGCATATGCAAATTCTTTGCCCAGTGCTCTGTTGGCTCCGACAGTTCTAACAGCAAGGGAGGATATCCCATACTCACCCTTCCCTGCAACACAATCAGTGCCTGAAAAGCATAGCAACATTGCTTCTTCAATTGGCAATCCCAACGTAACCATGTCAGAGGCTTTAAGAGCTAGCAGCATTTCTATACCTCAACCTAATCCACAAACTCTGCCCGGTGCCAATGTTGCCACTGGACCTACACTTCCTCAACACGTGGCTGTGCATCCCTACTCCCAACCTACTCTTCCTCTGGGACATTTCGCTAATATGATTAACTATCCATTCTTGCCTCAGAGCTATAACTATATGCCATCAGCTTTTCAGCAGGCTTTTGCTGGAAATAGCACATATCACCAGTCTCTGGCAGCAATGCTTCCGCATTACAAAAATAATGTTTCTGTCAGCAGCTTGCCTCAGTCTTCTGGTATTCCATCTGGATATGGCTTCAACAGTTCAACAAGTATTCCTGGAGGAAATTTTTCTTTGAATCCACCTGCTGCTCCTACTGGGACAACCGTTGGATATGACAATGTTACAAACTCCCATTTTAAGGACAACAATCATATGATTTCACTACAGCAGAACGAGATTTCTCCCATGTGGGTTCAGGGTCCTGGCTCACGAACAATGTCTGCAGTTCCTCCTAGCACATATTACAGCTTGCAGGGACAGAGTCAACAACCNGGTGGATTTCGGCAAAGGCAGCAGCCCACAGAGCATTTTGNATCCCTTGGCTACCCTAATTTCTACCCATCCCAGTCTGGCATTTCTCTGGAACATCAGCACCAACATCCTCCGGAAGCATCCATGGGCGGTTCACCAAGCCAACCATCTAAGCAGTCCCAACAACAAATATGGCAAAACAGCTACTAATCCTAGTCATCACCTACCGATTTTTCAGGGTCTCTTGTGCTTTATTTGGATAATAGAAAATGAAAGGGAAAAATGAGACCAAAGAAAATGAGAAGAGAAAATGAATGGAAAAGGTGNCCTTTCTTTTCACTTGTTTGGATTGATGGAAAAATGAGTGGAAAGAAAATGATAGTGTAAAATTACCTTATTATTCTTTGGCAAAAAGTCATACTAAAGTACCTTGCTACCTTCTCATCCCTTTCTCCAGACAATTGTCTGGGATATAGCCCTTTTGATATTTTCAGACAAGTGAGATCTTATAAGCTGAATCTTTGCGAGGGGAACATAGAAACCCATCTGAAGAAAGGGATCCTGTCTCTCNGTAGCATCAACGTGTTTTAACCAGTGAAGCTAAATGCAGAGTTAAATCTCCCAAGAGGAAAGCTTTGTGATATATTTGTCTTGTGATTAAAATATTCCACTATCTGTAGTCAAATGACAGAATTTTCATAAATTAGTGTTAACTTGAAAAACACTTGTAACATTTGGGTTTCATTTTTCTTTTAGCAACAAATAGCTTTGACTTTTAGTTTGATACAACCGACAATGGCCATTTTCTTGTTCTTTGGCACTNTGCAGTCTGAAATTATTTTTCTGTCCTAGAAACTCATACTGGCAAAGCATTAGCGAACCGATCAATAATCTATCATTGAAGCAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00342	34044	40965	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000342s00013716.1	PF06972.6	DUF1296	22	81	1.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.737
SRR1783600	control	19.664
SRR1783602	moderate drought stress	56.079
SRR1811619	moderate drought stress	55.296

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.684
DRR006520	Root Summer glycyrrhizin high producing strain	16.710
DRR006521	Root Winter glycyrrhizin high producing strain	9.190
DRR006522	Root Winter glycyrrhizin high producing strain	8.918
DRR006523	Root Summer glycyrrhizin low producing strain	17.321
DRR006524	Root Summer glycyrrhizin low producing strain	17.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.738
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.021
SRR2868004	Drought Stress (root)	12.904
SRR2967015	Control (root)	16.897

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.224
SRR9715740	Leaf	15.506
SRR9715741	Leaf	15.150
SRR9715739	Root	6.086
SRR9715742	Root	17.829
SRR9715743	Root	15.297

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.885
SRR8749028	MeJA induced 9h	23.171
SRR8749029	MeJA induced 9h	13.530
SRR8749030	Uninduced	9.195
SRR8749031	Uninduced	6.703
SRR8749032	Uninduced	7.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.284
SRR8400027	Control - Root	21.664