Gene detail

Gene detail information of Glyur000341s00020143.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32330.1	8.00E-106	heat shock transcription factor A1D
NR	XP_004512501.1	0	PREDICTED: heat shock factor protein HSF8-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q40152\|HSF8_SOLLC	3.00E-167	Heat shock factor protein HSF8
trEMBL	tr\|G7KDN6\|G7KDN6_MEDTR	0	Heat shock transcription factor A3 {ECO:0000313\|EMBL:AES95803.1}

Sequence

Transcript Sequence

>Glyur000341s00020143.1
CATAAATCCATCTTCTCCTCTCCTCTCCCCTCACTTCCAAATTCCAAACCCATCCATTTTTTTCCCCCTTTCACTTTTCAATCAAAAATTTCCAACATAAAATTTCAACATTTAGGGTTTGTGTTTTCGCAACAACAGACAGTATCCCCTGATTACTATTTTTTTTTTTCGCGTCTGTTGTTTCAAACTCAAATTCCCGACATGGACGGAGCGAGCGGCGGAGGCGCCGACGGAGGGTCAACCCAGTTGCCGGCGCCGGCGCCGGCGCCGATTCCGAACGCGAACGCGAACGCGCCGCCGCCGTTTCTGAGCAAGACGTACGACATGGTGGATGACCCATCGACGGACGCGATAGTGTCGTGGAGCNCAACCAACAACAGCTTCGTTGTTTGGGACCCACCCGAGTTCGCGAGGGACCTTCTTCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGACAGTTAAATACTTATCAACTAGATGGAGCAAAAGAGGGGAAATTGACAAAGAAAGCAGTTCTCAGGGAAATTGATGAAGGTGACATAAGGATTAGGGGTTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATTACTCGACGAAAGCCTGCGCATGGTCATAATAATCAACAGGTTCAGCAACCACATGGACAGAATTCATCAGTAGGGGCATGTGTGGAAGTTGGGAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAACAACAGACCACTGATAACCAGCTTCAAGCAATGGTACAGCGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTTCAGAGCCCTGGTTTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTGCTGAATCAGAGCGTGCTGCCCCTCCTGATGGACAAATTGTAAAATATCAACCTCTGATGAATGAGGCAGCAAAAGCAATGCTGAGGAAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCTGATAATTACTTGATTGGTGATGGTTCATCATCATCCAGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGAATTCTGGGGTAACTCTTCAAGAGGTTCCTCCATCTTCANTGCAGTCATCTCAGATTCCAGCTGCAACAGGGACTCAAAGACACATCCCCTCAGCAGAAAAACCTGAAATTTTATCTGTACCTCAAGCTGCAGCTTCTGAAAAAGTCATGAAGGATGGAGCACANGAGGCACCTACTATCCCGGTTTCTCAAGCAGATGTTGTCATGCCTGATCTCCCTTCAATGCCAGAGATAGTGACAGGAAATATTCTTGATATTCCTGAAGATAATTATATGGCTGCTGAGACAGATGAGGGATATATGGATCCGACTTCACTTGGAATTGACGGGTCATTTCCCATTGATTTTGAAGGTATTTCACCTGATGCAGACATTGACGATTTGTTAGGCAATCCTTCTATTTGGGATGATCTTTTGCGAACTCCGGTTCCAGAGGATATTGAGACCAATGTTGCTGAAGTATCCAAAGGGAATGAGGAGCAACCAACAGAAAATGGATGGGACAAAAAACACTTGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGACACAGAAAGAGTTTGATTGTCTATGAAATTTGTATTAATCTCTCTCATATTGTCCAAGGAAATCTGTGGAGTTGAGTATATGTGAATTAGATTGCAGTTTTCTCCCCAATCTTCATGTTTCCTCGGTGAGGAGAAAAATGGGAGGAAGAGAAGAACTTTTGAAAAATGCATATTGGTTTTTGATTGGAAGATTTACTTCATGAACAAGGACAGAAACAATGGGTGGCAGTGATTGCGAAGTTGAGCTGCGGGCTGTTTGTTCCTCTGTCAACTTATTCAATCTTCCTTAGGTTATGTATGTTTCAATGAAAATGGCTGAAATAGAAGAGAATGGAAGTAAATGTCATTAGTTATCATTGTTTAAATTGTTTAAAATGGATGGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	121164	125735	+

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020143.1	PF00447.12	HSF_DNA-bind	35	153	6.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.919
SRR1783600	control	11.786
SRR1783602	moderate drought stress	16.508
SRR1811619	moderate drought stress	16.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.993
DRR006520	Root Summer glycyrrhizin high producing strain	27.954
DRR006521	Root Winter glycyrrhizin high producing strain	16.159
DRR006522	Root Winter glycyrrhizin high producing strain	15.422
DRR006523	Root Summer glycyrrhizin low producing strain	24.526
DRR006524	Root Summer glycyrrhizin low producing strain	24.043
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.891

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.246
SRR2868004	Drought Stress (root)	18.571
SRR2967015	Control (root)	19.064

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.090
SRR9715740	Leaf	17.511
SRR9715741	Leaf	13.685
SRR9715739	Root	9.108
SRR9715742	Root	17.387
SRR9715743	Root	16.655

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.543
SRR8749028	MeJA induced 9h	25.415
SRR8749029	MeJA induced 9h	17.707
SRR8749030	Uninduced	12.090
SRR8749031	Uninduced	14.564
SRR8749032	Uninduced	16.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.219
SRR8400027	Control - Root	20.349