Gene detail

Gene detail information of Glyur000341s00020142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22470.1	2.00E-72	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_006572968.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q0WVK7\|PPR12_ARATH	3.00E-77	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial (Precursor)
trEMBL	tr\|K7K197\|K7K197_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02031.1}

Sequence

Transcript Sequence

>Glyur000341s00020142.1
ACCCTCTCCATGAACTTACTACACGCACGGTGTCTACTTCTACTCAACAGAAACAGAAGTACAAAACCCTATAACATAAGCCTCTTCAACCCAGACTCTCTGTTGCCCTCGCGACACAGCTATAGCTCAAAAATTCTGGTAGCAACAAACTATAGTAAAACAAAAACCAGCATAAACCTCGTCGCTTGAGGGGTGGTCGTTTTAGTTTGTTTTTTCACTCACAAGTTGATGTCTGTGTGTGTTGATGTCGGTGANTTGCTTGCTAGGACGTGGTTTGCTCCGCAGCAGAGTTCACTCCCAACAACACCCATGCTCGTTTTGGTTGTATTCTTCTTCCGCATTGATGTTGGAAGAAGACCAGGTGTTTGATGAAAGTCCAAAATTTCATGCCAATTTTGTGACTAATAGTTGTGTAGCCCCAGTTCCCAGAACCGAAAGTGAGTTGTTTCGTTTGGTGGTTAGGGTTTTAAAGTCCCTGAATTGGAGGGTTGCAAGGGAAGTAAGGTTCGGGAGTTGGGTTAAGAGTCATGGGTTTTCTCATTCAATCAATTCATTNAGAATAATCATTCACACATTTGCCTCCGCGGGGATGCGTTTGGAAGTATTTGCTTTGCTTAGAGATATTGTTGGATACTGTAATGAGGCCAAACATGATGCATTTGAATTGTTTTCAATTTTGCTGGATTCACCACCCCACTCTGTGGAAACGTCCTCTGTTGTTGTTGTGTTTGGTGTGCTCATGAAAGTGTTTGCCTCCAACTCTATGCTTGAACATGCGCTTGATGTGTTTGTGCGTGCTAAGCATGCTGGGCTTGAACCTGATGTAATGTCTTGCAATTTCTTGTTGAAATGNCTTGTAGAAGCAAATAGAGTGGAGTTTGTGAGATGTCTTTTTGAGGAACTGAGAGACTCCGGTCCATTGCCAAATATCCACACCTATACAATCATGATGAACTTTTATTGTAGAGAAGGTGCTGGGCGCAATGCTGATATTAGACGGGCTGCTGAGGTTTTAGGAAAGGTATATCGGAGTGGGGAAAACCCAACTGTNGTCACGTATGGTACTTATATTCATGGACTTTGTAGAGTTGGTTCTGTTGAGGTTGCTCTGAAGTTAATTCGGAAGTTGTGCTATAGAAACATGCCTCTCAGTAGCCATTGTTTTAATTCTGTCATTTATGGATTTTGTCAAAGAGGTGAAGTACATGAAGCTTTGCAGGTTTTGGAAGAGATGAAGAACTCTGGAAAATTGCCTGATGTCTATAGCTACAGCATTTTAATTGATGCATTCTGCAGGAAAGGAGATGTAGGNAAAGGTCTTGACTTGAGGAGGGAAATGGAGCTCTACCAGATAAAACCATCCATTGTTAGCTATACTNCCCTCATCCACTGTCTATGCAAGAATAAGCTGATGCAAGCCGCGGTGGAAATCTTCCGTAGTATCAGTGCTTCTGGTTGCAAATATGATCAGACTGTTTATGAAACATTAATTGATGGATTTTGCAGGCAAGGTGAAATGGATTCAGCAGTCAAGATTTTGGAGGAGATGATTGACAATAATTTGGTTCCTTCTGATTTTAGTTGTCACAGTCTAATTCGGGGATTCTACAAACTGGGACTCTTCGATAAGGCATTGGAAGTTTTTAATGTCATGCTACAGGATGGTATCTGGCCAGATACAATCGCTTGCAATCATATTCTTAGTGTATACTGCAGGGAAGGTCACTTCAAAGAAGCCTGGACACTGTTGGAGGAATTCCAAGAACACGGAGTTAACCTCAACTCACATTCATATAATGAATTCATCCACTGGCTTTGCAAAGAAAGTTATCCAGAAAAGGCACTGGAGCTTCTGCCAAGAATGCTTAAAAGGAATGTACTTCCTGGAGTTGTTAATTATAGTACTCTTATATCTGGCTTTGCCAAAAAATTAAAATTTAAAAAGGCTGTGATGTTATTCACAAAAATGGTAAAAGTGGGGATCACTTTTGACAAAACCACATATACAATTCTTATTAACATATTTAGCCGTAGTGGCAAAACGCATGAAGCATATGGCATATTTGAGGAAATGAAAGAAAGGGGTGTGTGTCCAGATCAGATGTCATATACAACTTTAATAGCTGGCTTTTGTAAAACTAGAGAAATGAAAATGGCCNGGGCATTATTTGAAGAAATGTTGGATGAACGCTTTTTGCCAAATGTAATTACTTATACTTGTTTGATTGATGGATTTTGCAAGTCAAACAGGATAGATTTGGCCTCATTGGTAGTTGATGAAATGAACANNGATGAAGTTATTCCTGATGTTGTAACTTATACTGTCCTTATTGCTTGGTACTGTAAGCATGGATGCAGAGATCACGCACTTAAGTTGTATGACGAAATGAAGGCAAAGGGTATTTGGCCTGATTCTGTAACACATCAGGTTCTGGGTCTGGAAGCTGGTGCAATTCAAGAAGGTAAGGTAGCTGTGTCAAAGCTTCCATTATGTCCAGCTGGCCATATTTTCAATGAACCTGAGCATAGATGGAGAATGCTGCAGATATCTTTTGGAGAAGCAGGGTTGGATCTTATAGCATCTGATGGGAAGCAATCGGCAAGACAACATGTTATTGCTTGGATTGTTGCGCTTGTGCCTTCATTCTGCACAATTGGTTTGTCTGCTTAATGCTTATGNTATCCTCCNTGCACAATTNCAGAGACAGAATCTGGAGCGCATTTAAGGGTTTCCTCTTCCAAATGGTGAATTTCTATACGTATGAGCTGGGAATCGAACCTCGACTACATGCTTAAGAGACCGAAGCCACTTACCACTCGAACCACACCAATTTGATTGTACCTTGTTTGTTTTACAAGCTTGGTTTCTGCAATAATAATAATAATAATTTTTCTTGCAAAGTAAACTAAAGGATTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	112081	118127	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020142.1	PF01535.15	PPR	160	189	0.42
Glyur000341s00020142.1	PF13041.1	PPR_2	192	241	9.00E-10
Glyur000341s00020142.1	PF12854.2	PPR_1	266	294	1.60E-06
Glyur000341s00020142.1	PF13041.1	PPR_2	305	351	7.90E-16
Glyur000341s00020142.1	PF13041.1	PPR_2	372	421	7.30E-12
Glyur000341s00020142.1	PF01535.15	PPR	446	475	1.30E-05
Glyur000341s00020142.1	PF13041.1	PPR_2	477	518	3.20E-09
Glyur000341s00020142.1	PF13041.1	PPR_2	547	595	3.10E-12
Glyur000341s00020142.1	PF13041.1	PPR_2	620	666	2.60E-15
Glyur000341s00020142.1	PF13041.1	PPR_2	687	730	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.001
SRR1783600	control	2.043
SRR1783602	moderate drought stress	4.361
SRR1811619	moderate drought stress	4.467

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.445
DRR006520	Root Summer glycyrrhizin high producing strain	4.464
DRR006521	Root Winter glycyrrhizin high producing strain	4.891
DRR006522	Root Winter glycyrrhizin high producing strain	4.627
DRR006523	Root Summer glycyrrhizin low producing strain	2.826
DRR006524	Root Summer glycyrrhizin low producing strain	2.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.410
SRR2868004	Drought Stress (root)	3.370
SRR2967015	Control (root)	3.472

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.048
SRR9715740	Leaf	1.149
SRR9715741	Leaf	1.451
SRR9715739	Root	0.378
SRR9715742	Root	1.418
SRR9715743	Root	1.534

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.607
SRR8749028	MeJA induced 9h	3.440
SRR8749029	MeJA induced 9h	2.316
SRR8749030	Uninduced	0.777
SRR8749031	Uninduced	0.637
SRR8749032	Uninduced	0.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.248
SRR8400027	Control - Root	6.666