Gene detail information of Glyur000341s00020141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32340.1 | 0 | NDR1/HIN1-like 8 |
| NR | XP_004512580.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Cicer arietinum] |
| Swissprot | tr|Q9LVX0|ARI3_ARATH | 4.00E-13 | Probable E3 ubiquitin-protein ligase ARI3 |
| trEMBL | tr|G7KDN8|G7KDN8_MEDTR | 0 | NDR1/HIN1-like protein {ECO:0000313|EMBL:AES95805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00341 | 104866 | 110249 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000341s00020141.1 | PF05773.17 | RWD | 154 | 289 | 1.30E-21 |
| Glyur000341s00020141.1 | PF01485.16 | IBR | 418 | 476 | 6.40E-09 |
| Glyur000341s00020141.1 | PF01485.16 | IBR | 515 | 555 | 3.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.528 |
| SRR1783600 | control | 11.563 |
| SRR1783602 | moderate drought stress | 15.726 |
| SRR1811619 | moderate drought stress | 15.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.631 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.045 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.075 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.168 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.797 |
| SRR2868004 | Drought Stress (root) | 9.952 |
| SRR2967015 | Control (root) | 10.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.607 |
| SRR9715740 | Leaf | 14.037 |
| SRR9715741 | Leaf | 11.785 |
| SRR9715739 | Root | 3.603 |
| SRR9715742 | Root | 7.058 |
| SRR9715743 | Root | 4.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.532 |
| SRR8749028 | MeJA induced 9h | 3.023 |
| SRR8749029 | MeJA induced 9h | 1.698 |
| SRR8749030 | Uninduced | 1.798 |
| SRR8749031 | Uninduced | 0.571 |
| SRR8749032 | Uninduced | 0.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.521 |
| SRR8400027 | Control - Root | 9.732 |