Gene detail

Gene detail information of Glyur000341s00020138.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17785.1	8.00E-71	myb domain protein 39
NR	XP_003533439.1	1.52E-168	PREDICTED: transcription factor MYB39-like isoform X1 [Glycine max]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	2.00E-89	Transcription factor MYB39
trEMBL	tr\|I1L4Y6\|I1L4Y6_SOYBN	6.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G33870.1}

Sequence

Transcript Sequence

>Glyur000341s00020138.1
ATGGGTAGGTCACCGTGTTGTCATGAGAGTGGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGACGAGAAGCTGATTGATTATATCAACAAACATGGGNATGGGAATTGGGGGACTCTGTCAAAGCGTGCCGGTCTCAATAGGTGTGGGAAGAGCTGCAGGCTAAGGTGGACCAACTATCTGAGGCCTGATATCAAGAGAGGCAAATTCACNGATGAAGAGGAGACACTTATCATCAACCTTCATTCAGTCCTCGGAAACAAGTGGTCAAAGATTGCAACCCATCTTCCAGGGAGAACAGATAATGAGATCAAGAATTTCTGGAACACCCACATAAGGAAGAAGCTCCTCAAGATGGGACTTGACCCTGAAACTCACAAGCCAAGGACTGACTTCAATCACCTCATGAGTCTTTCCCAGTTGCTTGGCATGTCAAATATGGGAAATGTAATGAGTANTTATAATTGGGGCAATAACAACCCTCTTGGTTTACAAGCAGATATCACTCAGCTAGCCAAAATGCAACTGCTGCAAAATCTGTTGCAAATCATGAACACCAATCCATCACTTGTCAACAACATGGGCAATAACCCCTATAGTAACCTATTGGGAAATCCAANCCTCCAACCATTCCTGAATGGGATCACAACAAACACACTCCAATCTAAGGAGCCTGTAGTCTTGAGTGGTGCAGAAGAATATGCAATCCCTGGTCTATACTCTGATCATCATGGCCAGAGTGGTGAGTCTTCTAAGCAAGATGTTTCAAAGTCATGGGCAGAATTAGAGGGTGGATCAAATTCAAATCTACAACAAGATCTTGAATATTACAGCAAAATTAACAGCACTTCTGGTGAAAATAATCAGGAAGAGAATCCAGCACTTCCTGCATTAGTTAATGCATCCTCTCCCAGAAATGGAACTTTCAACCAAATGGACAATGGGTGTAATAACACAACTCAAATGTCCACACAGTCAATCTTTGATGATTGGGACAAATTCCTTGAAGATGAAACAAGTGGCTCCTACTGGAAAGAGCTTCTAGACTTGACATCCACCTCAGCTTCACCAATTTCTTGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	68622	70437	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020138.1	PF00249.26	Myb_DNA-binding	14	61	8.80E-18
Glyur000341s00020138.1	PF00249.26	Myb_DNA-binding	67	111	4.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.067
SRR1783600	control	0.067
SRR1783602	moderate drought stress	0.070
SRR1811619	moderate drought stress	0.046

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.085
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.485
SRR2868004	Drought Stress (root)	10.455
SRR2967015	Control (root)	20.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.233
SRR9715740	Leaf	0.058
SRR9715741	Leaf	0.076
SRR9715739	Root	0.046
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.661
SRR8749028	MeJA induced 9h	22.509
SRR8749029	MeJA induced 9h	8.313
SRR8749030	Uninduced	57.662
SRR8749031	Uninduced	49.128
SRR8749032	Uninduced	12.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.011
SRR8400027	Control - Root	0.846