Gene detail

Gene detail information of Glyur000341s00020133

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17940.1	1.00E-36	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003517037.2	1.33E-86	PREDICTED: uncharacterized protein LOC100788211 [Glycine max]
COG	YP_867198.1	1.00E-09	hypothetical protein Mmc1_3303 [Magnetococcus marinus MC-1]
trEMBL	tr\|K7K1A3\|K7K1A3_SOYBN	5.00E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02110.2}

Sequence

Transcript Sequence

>Glyur000341s00020133.1
CATAAAAGGGTCCTTGGGTTCTCTTCGAGGAGTAAGGGGTGATCGCTCTTTCGCACGAACAAAAAACTTCCCCAGTCATAAAAAAAGCCATGACCATGAGATCTTCTCTCATGCGAACCGGTTCCCTTCCGGTTCCGAAACCGGTCCTTCCCGGTTCACCTCGAGTCTCTCTCTCGCGCCAAGCTTCCCTCCCCGGCGGCGACAAGAACAACGCCGTATCGCCGAAGCTCTCAATGCATTTCCTCTCCACCGGCGGGACCAAAAGGTCTCCATCGGAAGGTGCTGCGATTATTCGGTCCGCGAGCGAGGATTTCGGATTTCGCCGGAATCTGTATCGAACCGGAGCGCGCTCTCTCCCGGCGATTATACCGGACGAAGAAGAATACCTCTCCGATTGCGAAGGCATAACCTCGCTACGCCAGCCGAGCTACGTCGATGTCGAGGCTGGATCCGGCGGAGGCGGCGGATTTCACGGTGCCGCGACGTTCACCGGCGGGAACGGTGGTGATAGGATTAAGATCGGCGCGTATTATGAGGAAATGCTGAAGTCAAACCCAACCGACGCGCTTCTGCTGAGAAACTACGGCAAATTTCTTCACGAGGTGGAGAAAGACACGGCGAGAGCAGAGGAATATTACGGAAGAGCGATTTTAGCGAACCCTGGAGATGGCGAATTGCTTTCGCTGTACGGGAATCTAATATGGGAAAAGGAGAGAGATGAAGAGAGAGCCAAATCTTACTTTGATCAAGCAATTCATGCTGCTCCTGATGATTGGTATATATCCATCTCACATTTTCTCCACAACCAAACAGAGCATAATGATAATAATAGTACACGGTGCTGGGATCCTATGCGCATTTCATGTGGGAAGCGGAGGAGGAGGAGGAGGTTGTTAACGGCGGAGGAATGAAAGGGAAAGCAGAGGAATCNGCGGCGGGGCTGATCGCTGCTTTTTAATAGCATTAGTGGGTTTGAGAATGCCACTTGTGTGTTATATATCTAACTGGCATTAAAAGGTTACACGAAAACAATAAATGGTTTCGTCTCGTTTGTTTGATGTGTAGTAGTTAACTAGAAGCTCCAAGAAACGCCCTCCCCCTAGAAGAAGAGAGAAGACTGAAAGCGAAACCTTTTTGTGTCTTTTTTTTTTNCTCTTTCTTNCTTATGATCCTCATATTGGCTGTACTAATACCATGTAACCCTGTACATTGAACTCTTTTCAGTACTTCGTTAACAATATTAANGGGATAGAGGTTGTATAACTAAAACTCATTTTGTCAATGGCTTTAGGTTTGAACATAGTACAACGTTTGTATCAAAAAAAAAAAAAAGAACATAGTACAACGTGAGTCATTAGTAATTACAACTCCGTTGTTGAAATACCAATTTCAAACTAATTTTGGATTAGGCATTTTTTATTCAAGCGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	43844	45447	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020133.1	PF13414.1	TPR_11	158	226	2.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	133.634
SRR1783600	control	134.473
SRR1783602	moderate drought stress	331.201
SRR1811619	moderate drought stress	328.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	179.970
DRR006520	Root Summer glycyrrhizin high producing strain	177.188
DRR006521	Root Winter glycyrrhizin high producing strain	792.878
DRR006522	Root Winter glycyrrhizin high producing strain	773.984
DRR006523	Root Summer glycyrrhizin low producing strain	117.380
DRR006524	Root Summer glycyrrhizin low producing strain	119.123
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.016

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.649
SRR2868004	Drought Stress (root)	25.710
SRR2967015	Control (root)	35.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.153
SRR9715740	Leaf	22.296
SRR9715741	Leaf	25.461
SRR9715739	Root	231.896
SRR9715742	Root	110.017
SRR9715743	Root	133.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	122.613
SRR8749028	MeJA induced 9h	350.814
SRR8749029	MeJA induced 9h	323.247
SRR8749030	Uninduced	199.355
SRR8749031	Uninduced	236.071
SRR8749032	Uninduced	356.411

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	71.297
SRR8400027	Control - Root	84.934