Gene detail

Gene detail information of Glyur000341s00020132

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23910.1	3.00E-71	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004512517.1	0	PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum]
COG	YP_001517863.1	4.00E-17	NAD-dependent epimerase/dehydratase family protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q500U8\|TKPR1_ARATH	1.00E-34	Tetraketide alpha-pyrone reductase 1
trEMBL	tr\|G7KDR3\|G7KDR3_MEDTR	0	Cinnamoyl-CoA reductase-like protein {ECO:0000313\|EMBL:AES95830.1}

Sequence

Transcript Sequence

>Glyur000341s00020132.1
CATAAACGAAACACCCCCCCACCCCATTTTTTCTAGTCTTGGTCTCTGACCTTGGGCTGAAGAAGCTAGTGAATTGAAATCTGTCTCTTTCTTGGGTGTGTCCNCGTGCCCATCTATCAAAACTGCAACTACCTCCTTCCTACCTATCTACCCTGCACGCTCTTTGAATGCTACCAATACCCATCCCCCCCAACCGTATTTATAAATAATCCTACCCATTCCCTCTTCTCTCTTGTCATACTCTTTCTTCCTTTCCAATTCATACACACATCTACAAACACTAACAACAAGTTTACAACAACACACACACAAACACAAACACAAAGAGACCCAATTCTCATTTCTCATTCCTCTAAGGATATGGCACCTTCGTTCGACATAAGTAGCCACACGGTATGCGTGATGGACGCTTCCAGCCAACTGGGCTTAAGCCTGGTCCAGAGACTCCTCCAAAGGGGCTACACCGTCCACGCCTCCCTTCAAAAATATGGGGAAGAAGNGCTGTTGAATGGGGTTTCTGCTGATACCGATAAGCTCAAGATTTTTCGATCAGACCCACTTGATTACCATAGCATAACTGATGCTCTCAGAGGCTGCTCTGGCTTGTTCTACGCATTTGAACCTCCCCTTGACCAATCCAATGATCATGAATACATGGCGGACGTGGAGGTGAGAGCAGCACACAACGTGCTTGAAGCTTGCGCTCAGACAGAAACAATAGATAAAGTTGTTTTCACTTCTTCAGCAACCGCAGTAGTTTGGAGAGAGGATCGTAAAACCATTGAACGGGATTTAGATGAGAGGCATTGGAGTGATGTCAATTTCTGCCGCAAATTCAAGTTATGGCATGGGATGTCGAAGACACTGGCAGAGAAAACAGCTTGGGCGTTGGCAATGGACAGAGGAGTGAATATGGTGTCCATCAACGCGGGTTTGTTGATGACTCATGATATCTCCATCAAACACCCTTACCTTAGNGGTGCCGCTGAGATGTACGAGGATGGGGTGTTCGTGACCGTTGATTTGGAGTTCTTGGTGGATGCACACATATGCGTCTACGAGGATGTCTCATCCTACGGTCGTTATTTGTGCTTCAACCACATCATTAACACCCAAGACGACGCCGTTCAGCTCGCCCGCAAGTTGACCCCTGCCGCTTCTTCCTCCTTGCCTCNCAGCTGTGACGTTGGTAAGAGTTTCATCGAGCAGAGAATTAGCAACAAGAAGCTGAACAAATTGATGGTGGACTTTGAGGCTTGACTTCAATGGAGAATTGGTGATCTTTTTGGACGGCTGTTAGAGCAATAACCTTAGCTGTTCTTCTGCGGGAAACTATATTCGTATGTATACAATGTTACAAAAGAAATTTGTGTATGTATTTTATTTTTTTTTTTGGGTGGGTCAAGGAGGATTAACCCCAAGACCAGAACAAGCATATTTGTGTATGTATGCCCACCCCACATATTATTATATATAATATAATAACATTATTGTTTATTTAATCAAATAATAAATTCTTTATTTATTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	28955	32482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020132.1	PF01370.16	Epimerase	16	189	2.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.303
SRR1783600	control	36.653
SRR1783602	moderate drought stress	51.148
SRR1811619	moderate drought stress	50.535

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.366
DRR006520	Root Summer glycyrrhizin high producing strain	7.901
DRR006521	Root Winter glycyrrhizin high producing strain	5.383
DRR006522	Root Winter glycyrrhizin high producing strain	5.395
DRR006523	Root Summer glycyrrhizin low producing strain	40.291
DRR006524	Root Summer glycyrrhizin low producing strain	41.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.473
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.454
SRR2868004	Drought Stress (root)	133.972
SRR2967015	Control (root)	76.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.236
SRR9715740	Leaf	70.685
SRR9715741	Leaf	138.704
SRR9715739	Root	67.594
SRR9715742	Root	48.502
SRR9715743	Root	51.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	244.675
SRR8749028	MeJA induced 9h	696.096
SRR8749029	MeJA induced 9h	536.631
SRR8749030	Uninduced	1545.768
SRR8749031	Uninduced	1128.486
SRR8749032	Uninduced	996.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	96.687
SRR8400027	Control - Root	72.520