Gene detail

Gene detail information of Glyur000341s00020128

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35410.1	8.00E-69	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	AFK48727.1	2.52E-128	unknown [Lotus japonicus]
COG	YP_001938945.1	8.00E-14	RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Swissprot	tr\|P19683\|ROC4_NICSY	4.00E-33	31 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|I3T885\|I3T885_LOTJA	9.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:AFK48727.1}

Sequence

Transcript Sequence

>Glyur000341s00020128.1
AAATCTTCTCCAATCCAATTTTTATCTATCTTAAAAAAACGATAGATTGTTTTTTTCCCTCCCCAAAAGCATGATTTTGCAAAAAAAAATGTAGCAAAAAAAAAAAAAAAACAAAATCTGCGACACTGCCTCTTATCCATTTCTCCACCCTGTTGTGTTTAAACTTCAAACCACCAACCATACACCAATGGCAGCTTTGGAATCAGCGGTAACTGTGTTCGCACCTCAACGTATTCCCAATAATAACTATCGTTTCCTTGCAAAAGCACCCGACACCGTAAAGCTCCATGCTTCCCCCTCTCTCTCTTCCAACCACAACCCCCTCTTCTCTTCCAACAACGCCTCCTCCAAAACCCGAAGACTCTGCTTTCAGCTATGCTCTGCTTTGCAAGAGGCAGCAGAAGCAGCAACCGCAGAGGAAAAAACAGAGCAATCGCAACCAATAAACAACGTTAAGAAGAAGCTCTATGTATATAACTTACCTTGGTCTCTGTCGGCACCAGACATCAGGGACCTCTTTGCACAATGCGGGACTGTAACCGACGTCGAGATTATAAAGAACAAAGATGGGAAGGGCAGAGGCTATGCCTTCGTTACTATGGCTTCCGGAGAAGAGGCTCAGGCTGCTCTTGATAAATTTGATGCCCAAGAAATATCAGGACGGATAATAAGGGTAGAGTTTGCGAAGAGATTCAAGAAACTTCCTCCTCCACCTCCTCCAAGTGCCCCTCCTACCGAGACACGTCATGTAATTTATGCCTCCAACCTTGCATGGAAAGCAAGATCTACACATCTCAGAGACCTCTTCACTGAGAATTTCAAAGCACCAGTATCAGCCAGGGTTGTCTTTGAAAGCCCTGGTGGAAGATCTTCTGGGTATGGATTCGTTTCTTATCTTTCAGATGAGGAAGCAGAAGCTGCCATTTCTGCTGTGGATGGGAAGGAGCTAATGGGACGACCAATTCGCCTAAAAATCAGTGAAAAGAAAGTTAAAGAAGCTGGAGGAAGTGAAAAAGATGAAGACCAAGGTGATGATGCTCAACTGGAAGAATCATAAATCCTNATTTTTCATTTACTGATCTCTGGTCCTGGTATGTGGATTGAGAAGAAACCTCTACGAGCTGGAATTTTACCTCGTGCATACAGAACTGTGATGGATGACGTTTTGCATTCACAATCTTTTTCACAAAGGTTGAGTTTGGTATACCTTTAAAATGTGGGTGAAAATTTAAGAAGCTTTTCAATATAATTTTTCATATGAATCCATCTCTGAATTTTTTTTTTACTCCCATTTTTAAGTGTATACACATACGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	10661	14714	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020128.1	PF14259.1	RRM_6	93	161	9.00E-22
Glyur000341s00020128.1	PF00076.17	RRM_1	189	260	1.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.347
SRR1783600	control	6.419
SRR1783602	moderate drought stress	6.053
SRR1811619	moderate drought stress	6.183

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.826
DRR006520	Root Summer glycyrrhizin high producing strain	5.687
DRR006521	Root Winter glycyrrhizin high producing strain	5.166
DRR006522	Root Winter glycyrrhizin high producing strain	4.878
DRR006523	Root Summer glycyrrhizin low producing strain	6.532
DRR006524	Root Summer glycyrrhizin low producing strain	5.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.849
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.894
SRR2868004	Drought Stress (root)	3.806
SRR2967015	Control (root)	5.129

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.350
SRR9715740	Leaf	42.077
SRR9715741	Leaf	20.618
SRR9715739	Root	5.551
SRR9715742	Root	4.138
SRR9715743	Root	3.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.333
SRR8749028	MeJA induced 9h	5.875
SRR8749029	MeJA induced 9h	5.909
SRR8749030	Uninduced	1.462
SRR8749031	Uninduced	0.843
SRR8749032	Uninduced	1.610

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.708
SRR8400027	Control - Root	9.817