Gene detail

Gene detail information of Glyur000341s00020127

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46700.1	2.00E-88	Tetraspanin family protein
NR	XP_004300405.1	1.21E-165	PREDICTED: protein TORNADO 2-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9FIQ5\|TRN2_ARATH	1.00E-136	Protein TORNADO 2
trEMBL	tr\|A0A068UXQ1\|A0A068UXQ1_COFCA	5.00E-163	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP13039.1}

Sequence

Transcript Sequence

>Glyur000341s00020127.1
CTCCATTTCGTTTTTCGTCTTTCAAGAAACAACAACACAAAATCCCACAATTAACCATCACAAAAACCAACTAGGCCATCTCAATTTTTCTCCTACAAATTATTAAGATGGCAATGAGCAACAATGTAATCGGAGCCATAAACTTCGTAGCCGTGCTCCTCTCAATCCCAATCATCGGTGCCGGAATCTGGCTAACAAACGGGCCAGCNGATTCCTGCGTCAAGTTTCTCCAATGGCCCGTCATCATCGTTGGGGTTCTCATNTTNGTNGTGGCTCTNGCAGGTTTCGTNGGGGCATTTTGGAGAATCTCTTGNCTCCTAATATTCTACCTCGTTGCCATGCTTGTCCTCATTGTACTCCTCGTTTGCCTTGTGGTTTTTGTCTACATGGTCACACTTCGTGGACATGGTAACATTGAGCCCAATCGNGCTTACTTGGAATACCGTTTGGATGACTTCTCCGGGTTTCTGCGTCGAAGGGTGAGAAGCTCGTTCAAGTGGGATCAAATTAGGAGCTGTCTTAGCCAAACNAACATGTGTGCNGAGTTGAACCAGAGTTACCGGATGGCTCAGGATTTCTTTAACGCACATTTAACACCAATGCAGTCAGGGTGCTGCAAGCCACCGACGCAGTGTGCGTACACGTTTGTGAACCCAACATATTGGATTAGCCCCATCAACATGGCCGCGGACATGGATTGCCTGCAGTGGAACAACGACCAGACACAGCTTTGCTACAACTGTGACTCTTGCAAGGCTGGTTTGTTGGCGAATCTCAGGAAGGAGTGGAAAAGGGCTAATGTGATATTGATCATCACCGTCGTCGTTTTAATTGCCGTTTATTTGATTGGGTGCTGTGCATTTAGGAATGCCAAGACCGAGGACCTCTTCCGCAAATACAAACAAGGCTATACTTGAGAAATCAAAAGATTTTAATGTTTGATGTAGTACTAGTAAAGTTTGGTGTACCATGAAATTGGGTATTTTGTTTATGTTAATTATTAGTAATTAGTAATTGTGTTGGAGAAAATCCATGAATGAATTTGGGTTGTCTTTCACTTTTTTTCATAGAAGAAAAGATGCTTGTTTTTTTATGGGTAGTGTTGAAATTGAGTTGAAACTGGATACAAAGGTCACAAGTGCCCAGCGTGATTTGCGGAGACCGCACCGAAAGCTGATGTCTCGACTCGACTCTCGATGAGTTACCCTATTCGATCAGTATGGAAAGCTCAATATGGTAGCTTTTAATGGAGGATTTTCGGGGTATTATTATTTGTCCTATCCTACGCTTTGTCTAGTTGACTAGGTATCCAGATCCAAAGGGGAATATGGCACTCCAATTCCAAATTGCATGTTTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00341	5555	7838	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000341s00020127.1	PF00335.15	Tetraspannin	5	254	1.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.345
SRR1783600	control	39.452
SRR1783602	moderate drought stress	10.289
SRR1811619	moderate drought stress	9.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.707
DRR006520	Root Summer glycyrrhizin high producing strain	13.602
DRR006521	Root Winter glycyrrhizin high producing strain	0.041
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.593
DRR006524	Root Summer glycyrrhizin low producing strain	7.499
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.479
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.292
SRR2868004	Drought Stress (root)	14.102
SRR2967015	Control (root)	20.699

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.617
SRR9715740	Leaf	0.001
SRR9715741	Leaf	0.214
SRR9715739	Root	46.144
SRR9715742	Root	11.043
SRR9715743	Root	17.290

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.229
SRR8749028	MeJA induced 9h	1.221
SRR8749029	MeJA induced 9h	4.883
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.347
SRR8400027	Control - Root	63.126