Gene detail

Gene detail information of Glyur000340s00024371

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G26170.1	ARM repeat superfamily protein
NR	KEH17507.1	importin 9 [Medicago truncatula]
trEMBL	tr\|A0A072TJ92\|A0A072TJ92_MEDTR	Importin 9 {ECO:0000313\|EMBL:KEH17507.1}

Sequence

Transcript Sequence

>Glyur000340s00024371.1
GGCTAGTTCGGCTACGCATTCCTTCTGCTGAGCGGGAAAAAGCTGCTGCTGCGCGGTGAAGCAGCCGAAAGAGCAAAACGTCGACGTTCTAATTGAGCTCTAGGGTTTTCTCACTCTCGGTTCCGTTTCGTGCAACATGTCCAATGTTGTGGATCAAGATCAGCAATGGCTGCTCGGTTGCTTGTCTGCCACACTCGACCCGAGCCAGGAGGTTCGGTCTTTTGCCGAAGCGTCCCTTGATCAAGCCTCTCGCCAACCAGGTTTTGGCAGTGCATTATCAAAAGTTGCTGCAAACAAGGAGCTTGCCTTAGTTAAAAAGCATTGGCAGGAGGGTGAAGACTCATTTGAACCTCCTGTTGTTTCTAGCGATGAGAAGGAAATCATCCGCAGGATGCTTTTATTGACATTGGATGACCCGCACNGGAAAATTTGCACAGCTATTGGTATGGCTGTGGCATCCATTGCAGTGTATGACTGGCCAGAGTTATGGCCAGATTTGTTGCCATTTCTCCTGAATTTGATTAACAACCAAACCAACTTGAATGGAGTGCATGGAGCTATGAGATGCTTGGTTCTTCTCTCTGCGGACTTGGATGATAAAATGGTTCCAACATTAATCCCTGCTTTGTTCCCAAGTTTGCTGACAATTGTATCCTCTCCCCAGATATATGACACATACATACGAACCAAGGCCCTTTCCATAGTNTATTCTTGCACTTCTATGCTGGGGGCAATTAGTGGTGTCTATAAGGCAGAAACGAGTTCTTTAATAGTTCCTTTGCTCAAACCATGGATGGAACAATTTTCTTCTATTCTAGAAAATCCAGTTCAATCTGAAAATCCAGATGATTGGAGTATCAGAATGGAGGTTTTGAAGTGCTTGAATCAGTTTATTCAGAATTTCTCAAGCCTCATTAAAAGTGAATTTGAGGTTATACTAGGACCATTGTGGAATACATTTGTCTCCTCTTTGAGAGTTTACGAGCAAGCATCTATTGAAGGAGCAGAAGATTCATATGAGGGAAGATATGATTCTGATGGTTCAGAGAAAAGCCTTGATTCATTTGTTATCCAGCTGTTTGAACTTCTGTTGACCATTGTGGGTAATTCAAGACTCGGAAAGATGGTTGTGGCTAACGTCAAAGAATTGGTGTACTACACTATTGCTTTTCTTCAAATGACAGAACATCAGGTTCATACATGGTCTGTGGATGCTAACCAGTTCATTGCCGATGAAGAGGATGCCACTTATAGCTGCCGCATTTCTGGCGTGCTTTTACTGGAAGAGATAATAAGAGAAGCTACTCTTTTTGCCTTGTCATCTCTTTCAGAACAACTGTTTGAGACAGAGGAGTCAGGGTTTGAGACAAGTAGCTTGAAGAACCTGATTGAGCAGATTGTCACTGAGGACTCTCTAATAGATCCTCTTGAATACCCCTTTCTATATTCTCGCATTTTCACTTCAGTTGCTAAATTCTCCTCTGTGATAAGCAGTGGAGTACTAGAAAACTTTCTTAGTGCAGCAATGAAGGCAATTACAATNAATGTGCCTCCACCTGTAAAAGTAGGTGCCTGCCGGGCACTTTCCCAGCTCCTCCCTGAAGCAAAGAATGAAATTGTCCAACCGCAATTATTGGGTCTATTTTCATCCCTCACAGATCTTCTTAATCAAGCATCAGATGAAACCTTGCACATGGTACTTGAAACATTGCATGCAGCAGTAAAGGCAGGTCATGAATCACCAGCATTAGTAGAAGGCATTATTTCTCCTGTAATCCTTAATGTATGGGCATCACATGTTTCGGATCCTTTTATCAGTATTGATGCAATTGAAGTTCTTGAGGCAATCAAAAGCATTCCTGGATGTATACATCCATTGGTTTCTAGAATCTTGCCATATATTGGACCAATTTTAAATAAACCCCAAGAGCAGGCTGATGGTTTGGTATCTGGGTCATTAGATCTGAATGCTCCTGGAGATGTAGTGAAAGCAATATATGATGTCTGTTTTAATGCTGTTATCAGAATAATCCTTCAAAGTGATGAGCATAGTGAAATTCAGAATGCTACAGAATGTTTATCTGCTTTTATATCTGGGGGAAGACAAGAAGTTCTTGTTTGGGGATCTGATTCTGGATCAACTATGAGAAGTTTACTTGATATAGCCTCAAGACTACTAGACCCCAATTTGGAAAGCTCTGGGTCTCTTTTTGTTGGAAGTTACATTCTTCAACTCATATTGCATTTACCATTGCAAATGGCAGTACATATACGAGACCTCGTTGCTGCTCTTGTCAGACGTATGCAATCTGCTCAAATTGCTTCCTTGAGAAGCTCATTGCTAGTTGTTTTTGCCAGATTGGTACACATGAGCGTTCCTAATGTTGGACAATTTATTGATTTGCTGATCTCAATTCCTGCCGAGGGACATGATAATTCCTTTGCTTATGTGATGTCAGAATGGACTAAGCAGCAAGGTGAGATCCAGGGGGCCTATCAAATAAAAGTTACTACAAGTGCCCTGGCCTTGTTGCTAACCAGCAGGCACAATGAACTGACAAAAACACGTGTCCAAGGTCATCTGATTAAGTCTGGCATGGGAATAACCACAAGATCAAAAGCTAAATCAACTCCAGATCAGTGGGTAATGTTGCCACTTCCTACAAAGATTGTAGCTTTACTGGCGGATGCATTAACCGAAATACAAGAACAAGTATTGGCTGGCGATGATGAGGATAGTGACTGGGAAGAAGTTCAAACGGATGGCATTGAAAATGATAAAGAGTTTCTTTATACAGTATCTACATCAACTCCGGGAAAACCCACATATGAACATCTTGACGCAATGGCCAAAGTATTTAGCGAGGATCAAGATGATCAGTATGAAGATGACCTTTTAAGTGTTGCCGATCCTCTTAATCAGATAAATCTGGCAAATTACCTTGTGGATTTCTTTGTTAACTTCTCACGGTCTGACAGACAGCTCTTAGATCACATTTGCGAGAGCTTGACTCAGCCTCAACGAAATGCAATTCAAATGGTACTGCAGAGATGAGAATTTTAGTGCCATGCCCCCCCATGGAGTGAGAGAAACAGAGATGGTTGGTAAGGAATATGTTGCCGTTGTTCAGGTTGGGGAATCTGTTGTTCTGAAAGATGTATTCTTTCTCCAGCTGTGTGTTTCCCCCTTGTATGTTTATTAATAATTAATTAATTAATTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00340	130833	153710	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

molecular_function

GO:0005488 binding

GO:0008536 Ran GTPase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.279
SRR1783600	control	9.258
SRR1783602	moderate drought stress	11.097
SRR1811619	moderate drought stress	11.043

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.200
DRR006520	Root Summer glycyrrhizin high producing strain	6.960
DRR006521	Root Winter glycyrrhizin high producing strain	5.502
DRR006522	Root Winter glycyrrhizin high producing strain	5.364
DRR006523	Root Summer glycyrrhizin low producing strain	8.127
DRR006524	Root Summer glycyrrhizin low producing strain	7.917
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.712
SRR2868004	Drought Stress (root)	10.239
SRR2967015	Control (root)	11.548

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.208
SRR9715740	Leaf	3.769
SRR9715741	Leaf	2.794
SRR9715739	Root	2.473
SRR9715742	Root	7.649
SRR9715743	Root	6.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.007
SRR8749028	MeJA induced 9h	15.320
SRR8749029	MeJA induced 9h	16.106
SRR8749030	Uninduced	3.619
SRR8749031	Uninduced	4.301
SRR8749032	Uninduced	4.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.531
SRR8400027	Control - Root	15.488