Gene detail information of Glyur000340s00024366 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71500.1 | 3.00E-26 | Rieske (2Fe-2S) domain-containing protein |
| NR | XP_009767327.1 | 2.40E-42 | PREDICTED: uncharacterized protein LOC104218509 [Nicotiana sylvestris] |
| trEMBL | tr|C6TBX1|C6TBX1_SOYBN | 3.00E-42 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU19323.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00340 | 72747 | 73317 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000340s00024366.1 | PF13806.1 | Rieske_2 | 69 | 124 | 1.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.367 |
| SRR1783600 | control | 2.938 |
| SRR1783602 | moderate drought stress | 2.011 |
| SRR1811619 | moderate drought stress | 2.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.872 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.909 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.666 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 93.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 90.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.613 |
| SRR2868004 | Drought Stress (root) | 2.016 |
| SRR2967015 | Control (root) | 0.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 83.079 |
| SRR9715740 | Leaf | 113.993 |
| SRR9715741 | Leaf | 62.089 |
| SRR9715739 | Root | 0.586 |
| SRR9715742 | Root | 2.043 |
| SRR9715743 | Root | 1.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.667 |
| SRR8749028 | MeJA induced 9h | 1.472 |
| SRR8749029 | MeJA induced 9h | 0.890 |
| SRR8749030 | Uninduced | 0.290 |
| SRR8749031 | Uninduced | 0.095 |
| SRR8749032 | Uninduced | 0.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.530 |
| SRR8400027 | Control - Root | 3.648 |