Gene detail

Gene detail information of Glyur000340s00024356

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	8.00E-28	disease resistance family protein / LRR family protein
NR	KHN02657.1	7.71E-161	LRR receptor-like serine/threonine-protein kinase GSO1 [Glycine soja]
COG	YP_003194814.1	1.00E-18	hypothetical protein RB2501_09035 [Robiginitalea biformata HTCC2501]
Swissprot	tr\|O82318\|Y2579_ARATH	5.00E-32	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (Precursor)
trEMBL	tr\|K7MHW4\|K7MHW4_SOYBN	2.00E-156	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29060.2}

Sequence

Transcript Sequence

>Glyur000340s00024356.1
GGTGTAGCGATGAACTCTCTTGAGCGGCTTGACCTCTCCTATAATAGACTCAAGGATGGGGTTTTGAAATCCTTCATGAATATATGCACCTTACGTGCTTTAGACATGGAGGGAAACAATTTGACTGAAGACCTTCCCTCTATTCTTCATAATTTGTCTGGTGGCTGTGTTAGAAACTCAATACAGGAGTTGTATCTGAGTTCTAATAAAATCACTGGCTCTTTACCTGACCTTTCCATGTTCTCATCTCTGAAAACATTGGATCTTTCCGGGAATCAACTAAGTGGAAAGATACCAGAAGGTAGCATCCTGCCGTCTCAGTTGGAGCATTTGTCAATCTATTCAAACTCTTTAGTAGGGGGAATTCCAAAATCGTTTGGGAATGCATGTGCATTGCGCTCATTGTATCTGTCCAATAACAGTTTAAGTGACGAGCTTCCAGTGATAATCCATCACTTGTCGGGATGTGCTAGATACTCACTACAGGAATTAGATCTAAGCATGAATCAAATCAATGGCACACTACCTGACCTCTCAATATTCTCATCTTTAAAAATATTATATCTTTATGAAAATAGGCTAAATGGGAAGATACCTCAAGATATTCGATTTCCAACTCAATTGGAGACACTGTATATGAGTTCAAACTCTTTGGATGGTGTGATATCTGACTCCCATTTTGCTAATATGTCCAAGTTAGAGTCATTGGACTTGTCTGACAACTCATTGGCTTTGACATTTACCCAAAATTGGGTCCCACCTTTTAAATTGCGCAAAATTGGATTAAGGTCTTGCAAACTTGGTCTTGCATTTCCGAAATGGTTGCAAACACAAGACAACTTTCAAGACCTTGACATTTCTAATGCTGGAATATCGGATATTGTTCCAGAGTGGTTTTGGGCCAAACTAGCATTCCAAGAGTGGGATAGCGTCAATATTTCACACAACAATCTCAAAGGCATAATTCCGAATTTTTCATCACCAGTAAAGAATCCTCAACCTCATTCTTTATCTCTCGCATCAAATCAATTTGAAGGCCCTATTCCACCATTTCTACGAGCTGGTGGTATTGTTGGAGCCATCACAACTCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00340	2	1220	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000340s00024356.1	PF13516.1	LRR_6	5	25	0.16
Glyur000340s00024356.1	PF00560.28	LRR_1	31	51	0.2
Glyur000340s00024356.1	PF12799.2	LRR_4	61	95	3.60E-08
Glyur000340s00024356.1	PF00560.28	LRR_1	132	149	0.058
Glyur000340s00024356.1	PF00560.28	LRR_1	160	178	0.21
Glyur000340s00024356.1	PF13855.1	LRR_8	207	243	4.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.163
SRR1783600	control	0.101
SRR1783602	moderate drought stress	0.069
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.070
DRR006520	Root Summer glycyrrhizin high producing strain	0.225
DRR006521	Root Winter glycyrrhizin high producing strain	0.101
DRR006522	Root Winter glycyrrhizin high producing strain	0.104
DRR006523	Root Summer glycyrrhizin low producing strain	0.340
DRR006524	Root Summer glycyrrhizin low producing strain	0.385
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.566
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.256
SRR2868004	Drought Stress (root)	0.649
SRR2967015	Control (root)	0.514

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.197
SRR9715740	Leaf	0.440
SRR9715741	Leaf	0.411
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.097
SRR8749028	MeJA induced 9h	0.275
SRR8749029	MeJA induced 9h	0.055
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.099