Gene detail

Gene detail information of Glyur000339s00020816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29060.1	0	elongation factor Ts family protein
NR	KHN45619.1	0	Elongation factor Ts [Glycine soja]
COG	YP_007082853.1	2.00E-92	translation elongation factor Ts [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|O78481\|EFTS_GUITH	1.00E-74	Elongation factor Ts, chloroplastic
trEMBL	tr\|I1L4K9\|I1L4K9_SOYBN	0	Elongation factor Ts {ECO:0000256\|RuleBase:RU000642}

Sequence

Transcript Sequence

>Glyur000339s00020816.1
AAATTTTTCATAAAATTACGTTTTTTGGGATAAAGTGAAGATTTTGGGTTTCTGACGGCGCGTCTAAACGCACCAGCTANAGGCTAGAGCAGCGTTTTGGCTCAAGGATGAAGATAAGGATTTAAAGCCTTGCCATTCATTTCCCTCCCTCCATTCTCACCCTTTATCATCGATACCCATTTCCAGTTTCGCCAAAAAGACTCCATTTTTACACTTAAACACAAACTTCAAAGACCAAAATTCCTCTCACTGTGTGCTTTTTTTGTGTGGCCCTTTTGAAGTTTCCGAGGTGACACGGGATGAACTGATCCTGAAATATAGCTAAGTTTTACAATTCAAGCCAACATGAATCCCACAATATCATGCTCTGTTGGCAATGTTTCAATTATTCCTGGATTTGCCTATTCAGCAAGGAAGAGCAACTCTTTAACAAGAATCAGTTTGTCAAGGAGTTCTGTAAAACATGGATCCTCAACTTTGAGATTTATCTTTCCTTCACTTGTTGTCAGCGGTGTGTTTCCACAGAACAAAAGGATATGCTCTTTTCATAAAAAATCTAGAACCTCCATATCAGCCACAGGAACAGAAGTATCAGTGGAGGAACCGGGTTCACCTGTTGCAGATGAAGTGCCTGGTGAAACTCCTTCGGATGAAGTTGGAACAAGTGAAGATTTATCTTCTAATTCTGATTCCAACCCGGCTCCTGCAAAAGCCAAACGATCAAGACCCATAAGGAAAAGTGAGATGCCTCCTNTAAAGAATGAGGATTTGGTTCCCGGGGCAACTTTTATGGGGAAAGTAAAATCTATCCAGCCATTTGGTGCCTTTGTTGATTTTGGAGCTTTCACAGATGGGCTTGTTCATATTTCAATGTTGAGCNATGACTTTGTAAAGGATGTTGCAAATGTTGTTTCTGTAGGACAAGAAGTGAAGGTGAAGCTGCTTGAAGTGAACACTGAAACTCAGCGTATTTCTCTCACTATGCGTGAAAATGTTGACACCGGTAAGCAACGCAAAGATGCACCNGTCAATGCAGAGAAAGCTGGACCTGGGAGGAGGAACACTTCAAAACCTGGTGGAAAGAGAGATGGTATGAAGAAAAGCACGAGATTCGTTGAAGGCCAGGAGCTGGAGGGTACAGTGAAGAATATGACAAGGAGTGGTGCTTTTATTACTCTTCCTGAAGGGGAGGAAGGATTTCTACCTGTATCTGAGGAACCTGATGATGGATTTGGGAATGTCATGGGAAACACTTCGCTGGAGGTTGGTCAAAAAGTCAACGTACGAGTTTTGCGTATCACAAGAGGACAAGCAACATTGACTATGAAGAAGGAGGTAGATGTTGCNGAATTGGACTCACCACTTGACCAAGGGGTTGTTCATGCTGCAACAAACCCTTTTGTATTGGCTTTTCGCAAGAATAAGGATATTTCTGCATTTTTGGATGAGAGGGAGAAGATTCAGAGTGAAGTTAAAAAATCATCAACTACAGGAACATTGGAAGAAATTAATGGAACTGACAAGCAAGGGGAAACTAATCCTGATGTCCAGGGTGAACCACAAAGCATTGAGAATTTAACAGATGATGTTCCTTCTGCGGTAACAAATAATGCTGAAGATGTTATTTCTGAAAATGAGGAAGATGTGGTAGCCAGTTCATTGGATGGTTCCGCTACAACTGGTATAGATAGTGCCACTGAGAAGGAAACAGAGGTGGCTTCTGGAAGTTTGGCTCTTGAAGGGGATCTATCTTCTGTAAATCCAGTTATTGAGGAAGCTATTCAGACAGATGTCACAACAAGCAATGTAGCTGATGAAAATGTAACAGAAAATGGAATTGATCAAATTGTTGTGGAAGATGAAAAACAATCAGAAACTTCCAATGAAAAGGAAGAATTTGCAGCTGCAACACTAACAGACGGTGGTGCAGCTGAGCCTAGCCCCGATACAGGATCAGATATTNCATCAAGTGCAACAGCTCCACAAGAAACTGCAGATGACAATGTTGGAGCTGTTCCAGAGAACAATGACAGTGAAAATGGTTTGAGTGGACAAAATGGTGATTTGTCTCCTGAGGGAAGCTTGAATAAAGATGGAACAGAAGAAAATGATCAAGTTCCCTCTCCTGAAAGTCCTGCCACTGAAGTTGTAAAAGAACCTGTCGCAGAAGAAGTGCAAGAACCTGTCGCAGCACAAGTTGAAGATGAAGAGGTTANGATTGCATCAGAGGAAAACAGCAGCTTATCTAATTCTAATGGACAAACTGGCATTACTACCTCAGATCAAGGCTCTAGTAAAGCAACTATATCACCAGCACTTGTGAAGCAACTCCGGGAAGAAACAGGAGCCGGAATGATGGATTGCAAAAAAGCTCTATCAGAGTCTGGAGGGGACATTGTTAAAGCACAAGAGTTCCTTAGGAANAAAGGTCTTGCAAGTGCAGATAAGAAAGCTTCTAGAGTGACTGCTGAAGGAAGGATAGGTTCTTACATCCATGANAGCAGGATTGGTGTTCTGGTAGAAGTAAACTGTGAGACAGATTTTGTATCCCGAGGTGAAATTTTTAAGGAGCTTGTTGATGATATAGCCATGCAGGTGGCTGCATGCCCTCAAGTAGAGTATCTTGTTCCTGAAGATGTTCCTNAGGAAATTGTGAACAAAGAAAAAGAGATAGAAATGCAGAAAGAAGATCTTTTGTCGAAACCGGAGCAGATAAGATCGAAGATTGTTGAAGGGCGTATAAGGAAAAGAATCGAGGAGCTGGCATTGCTTGAGCAGCCCTACATCAAGAATGATAAAGTGGCAGTGAAGGACTGGGTCAAACAGACCATTGCAACTATCGGAGAAAACATTAAAGTTAAGAGGTTCGTGCGGTTCAACCTGGGAGAGGGTTTGGAAAAGAAAAGCCAGGATTTTGCTGCTGAAGTGGCTGCACAGACTGCAGCAAAATCAGCGCCTACACCAGCGAAAGAGCAGCCTGCTCAATTAAGGGAAGAAACTGGAGCAGGGATGATGGACTGTAAGAAAGCTCTTGCTGAAACTGGAGGGGATCTTGAAAAGGCCCAAGAATACCTCAGAAAGAAGGGTCTCTCAACTGCTGACAAGAAATCAAGCAGGCTAGCAGCTGAAGGCAGAATCGGTTCATACATTCACGATTCACGCATTGGGGTTCTAATCGAAGTGAACTGCGAAACCGACTTTGTTGGTAGAAGCGAGAAGTTCAAGGAGTTGGTTGATGATCTTGCCATGCAAGTTGTGGCTTCCCCACAGGTGCAGTTTGTATCCATTGAAGACATTCCGGAGGCTGTCGTGAACAAGGAGAAAGAACTNGAGATGCAGAGAGAAGACCTCGCTTCGAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGGGTGACAAAGAGGCTAGGGGAGCTTGCTCTTCTAGAGCAACCCTTCATTAAGGATGACAGTGTTTTAGTGAAGGACTTGGTGAAGCAAAGTGTGGCNGCCATCGGAGAGAACATTAAAGTGCGGCGCTTTATTCGGTTCACTCTCGGCGAGACAGCCGAAAAAGAAACAACAATACCAGCATAG

Protein Sequence

>Glyur000339s00020816.1
MNPTISCSVGNVSIIPGFAYSARKSNSLTRISLSRSSVKHGSSTLRFIFPSLVVSGVFPQNKRICSFHKKSRTSISATGTEVSVEEPGSPVADEVPGETPSDEVGTSEDLSSNSDSNPAPAKAKRSRPIRKSEMPPXKNEDLVPGATFMGKVKSIQPFGAFVDFGAFTDGLVHISMLSXDFVKDVANVVSVGQEVKVKLLEVNTETQRISLTMRENVDTGKQRKDAPVNAEKAGPGRRNTSKPGGKRDGMKKSTRFVEGQELEGTVKNMTRSGAFITLPEGEEGFLPVSEEPDDGFGNVMGNTSLEVGQKVNVRVLRITRGQATLTMKKEVDVAELDSPLDQGVVHAATNPFVLAFRKNKDISAFLDEREKIQSEVKKSSTTGTLEEINGTDKQGETNPDVQGEPQSIENLTDDVPSAVTNNAEDVISENEEDVVASSLDGSATTGIDSATEKETEVASGSLALEGDLSSVNPVIEEAIQTDVTTSNVADENVTENGIDQIVVEDEKQSETSNEKEEFAAATLTDGGAAEPSPDTGSDIXSSATAPQETADDNVGAVPENNDSENGLSGQNGDLSPEGSLNKDGTEENDQVPSPESPATEVVKEPVAEEVQEPVAAQVEDEEVXIASEENSSLSNSNGQTGITTSDQGSSKATISPALVKQLREETGAGMMDCKKALSESGGDIVKAQEFLRXKGLASADKKASRVTAEGRIGSYIHXSRIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEYLVPEDVPXEIVNKEKEIEMQKEDLLSKPEQIRSKIVEGRIRKRIEELALLEQPYIKNDKVAVKDWVKQTIATIGENIKVKRFVRFNLGEGLEKKSQDFAAEVAAQTAAKSAPTPAKEQPAQLREETGAGMMDCKKALAETGGDLEKAQEYLRKKGLSTADKKSSRLAAEGRIGSYIHDSRIGVLIEVNCETDFVGRSEKFKELVDDLAMQVVASPQVQFVSIEDIPEAVVNKEKELEMQREDLASKPENIREKIVEGRVTKRLGELALLEQPFIKDDSVLVKDLVKQSVAAIGENIKVRRFIRFTLGETAEKETTIPA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00339	129251	138193	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003676 nucleic acid binding

GO:0003746 translation elongation factor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000339s00020816.1	PF00575.18	S1	144	214	6.80E-20
Glyur000339s00020816.1	PF00575.18	S1	258	323	2.20E-08
Glyur000339s00020816.1	PF00627.26	UBA	654	691	8.20E-09
Glyur000339s00020816.1	PF00889.14	EF_TS	707	748	2.60E-11
Glyur000339s00020816.1	PF00889.14	EF_TS	742	848	1.20E-26
Glyur000339s00020816.1	PF00627.26	UBA	879	910	7.00E-08
Glyur000339s00020816.1	PF00889.14	EF_TS	926	970	3.30E-12
Glyur000339s00020816.1	PF00889.14	EF_TS	961	1067	1.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.299
SRR1783600	control	12.354
SRR1783602	moderate drought stress	11.426
SRR1811619	moderate drought stress	11.566

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.490
DRR006520	Root Summer glycyrrhizin high producing strain	16.441
DRR006521	Root Winter glycyrrhizin high producing strain	7.452
DRR006522	Root Winter glycyrrhizin high producing strain	7.098
DRR006523	Root Summer glycyrrhizin low producing strain	9.122
DRR006524	Root Summer glycyrrhizin low producing strain	8.911
DRR006525	Leaf Summer glycyrrhizin high producing strain	98.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	97.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.917
SRR2868004	Drought Stress (root)	6.540
SRR2967015	Control (root)	6.652

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.139
SRR9715740	Leaf	94.209
SRR9715741	Leaf	52.107
SRR9715739	Root	0.695
SRR9715742	Root	7.918
SRR9715743	Root	7.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.846
SRR8749028	MeJA induced 9h	9.176
SRR8749029	MeJA induced 9h	6.919
SRR8749030	Uninduced	5.216
SRR8749031	Uninduced	5.915
SRR8749032	Uninduced	4.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.426
SRR8400027	Control - Root	13.190