Gene detail

Gene detail information of Glyur000339s00020809.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28860.1	4.00E-58	casein kinase I-like 4
NR	XP_002514257.1	2.88E-166	casein kinase, putative [Ricinus communis]
COG	YP_004862735.1	3.00E-08	serine/threonine protein kinase [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|P42158\|KC1D_ARATH	1.00E-52	Casein kinase I isoform delta-like
trEMBL	tr\|B9RKL3\|B9RKL3_RICCO	1.00E-166	Casein kinase, putative {ECO:0000313\|EMBL:EEF48211.1}

Sequence

Transcript Sequence

>Glyur000339s00020809.1
GTAACCTTCCGCTTGAATATACTACAACGGTTCCATTTTTGTTTATTAGTCAATTTTCTTGTCCTGGTAAGCATCCATCCCTACCTGATTAGAGGGGAAGGTGAAGAAGACAAGGGGGGAAATGACAAAAGTACCCCCCTGGTGCGCTTAATTTGATTGTTCATTCATTCATTCATTCATTCATTCATGCTGTAGCTACTACTGGAATTGAGCGTAAGAATAAGATCGATCATCGAAGCGTTGTTTTTGTGTGTGTTTGAGGAGAGAAAGCAGCATCAGCATCAGCATCGGGTTAACGGTTAAAGGGAGTGAGAGAGAGAAAGAGATCAGATAGATAGATAGATAGATAGATAGATAGATATATGGAGCGCATCATCGGCACCAAGTACAAATTGGGCCGCAAGATCGGAAGCGGATCTTTCGGTGAAATCTACCTCGCCATGCATGTTGATACCTTTGAGATCGTCGCCGTCAAGATCGAGAATGGCAAAACGAAGCATCCACAATGGTGTGGTGTAGATGGGGAGGACAATGTGCTCGTTATGGATTTGCTGGGGCCTAGTCTTGAGGATCTCTTTGTCTATTGTGGAAGAAAGTTCTCCCTCAAAACCGTGTTGATGTTGGCTGATCAAATGATGACCAGAATAGAATATGTGCATTCTAAAGGATTCCTACATAGGGATATAAAACCAGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTATTGTGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCACTCTCTGACCTTTGATCAGCGACCTGATTATGCATTCTTGAGGCGCCTATTTCGAGAGTTATTTGCTCGGGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGACTAGAGTCCAGCCTCACATATCCTCTGTTCCTGGAGCAAGCAACAATCGTGCAATGCCCATGGATGTTGACAACCACCGAGCAGAGTACATTAAACCAGGCAATGCTAGTGGTTCTGGTGTTAAATTTCAGTTTAAATCACCAGCGGGTAAAAATTTGGCTTCTGAAAATCCTCTTAACAAGAATATTTTTGGTGAAGCAACTGTCCCCTCTACTTCATACTCTATTGAAGCATCAAAAAGGAACTCCTTGAAGGCTGCACTGTCCACTGAAGCTGTGAACCCTGGATATGGTGGGAGCAGTAAAATTGGCCCTTCAAGTAGCTGGATTTCACCTCTGCAGCGCATATCTTCTGACAAATGAATGCTCAATATGGTGGGAAACATGAAACTGCATATTCTTTCTATATTGCTTGCATCTCTTCGNTGTGTTGTTTGTCAAGAATTTTTCAAGGGATCTAGCTATGGAGACTGCAAATGCGCTACAAGGTTGATAAATTTCATAGCTCATCTTTCGAGGCCAGCTTGTGTTGCTTTTTTCTCAAGGTTTCTTTTTCCGACCTATATTGGCTGAAGTATGAAATATGTAGTTAATTATCATCTACATGGATGTCATTGTGTATTAGTTGAAATTTCAATTTTGTTTACTTTTCACTTTATTTTTATCCCACAAATTTCTTCTTTTGGTTTTGTCTGAATTTGTTGCCTATTGTCAAATGAAATATGCCTCTCCATACAGGTTGCATTGTCATAGCTCTTAGGACTACTTCAGCCTTTGTCAAATATCTCTTGAAGATAATTTTGTAATTTTATTTTTAGTTCATGCACAATACATGTGAAAAGTAAGTGCTTCCAAAGGGAAAAATAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00339	86651	92031	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000339s00020809.1	PF00069.20	Pkinase	9	46	2.70E-05
Glyur000339s00020809.1	PF00069.20	Pkinase	55	116	6.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.162
SRR1783600	control	35.253
SRR1783602	moderate drought stress	40.016
SRR1811619	moderate drought stress	39.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.675
DRR006520	Root Summer glycyrrhizin high producing strain	41.092
DRR006521	Root Winter glycyrrhizin high producing strain	29.375
DRR006522	Root Winter glycyrrhizin high producing strain	28.724
DRR006523	Root Summer glycyrrhizin low producing strain	45.573
DRR006524	Root Summer glycyrrhizin low producing strain	46.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.800

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.094
SRR2868004	Drought Stress (root)	51.281
SRR2967015	Control (root)	44.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.916
SRR9715740	Leaf	22.849
SRR9715741	Leaf	31.391
SRR9715739	Root	21.666
SRR9715742	Root	43.942
SRR9715743	Root	39.246

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.006
SRR8749028	MeJA induced 9h	38.931
SRR8749029	MeJA induced 9h	32.902
SRR8749030	Uninduced	35.211
SRR8749031	Uninduced	60.830
SRR8749032	Uninduced	34.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.266
SRR8400027	Control - Root	63.026