Gene detail

Gene detail information of Glyur000339s00020802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20050.1	0	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases
NR	XP_003516479.1	0	PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like isoform X1 [Glycine max]
COG	YP_002490665.1	2.00E-10	serine/threonine protein kinase [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q9SL76\|P2C19_ARATH	0	Probable inactive cyclic nucleotide-dependent protein kinase At2g20050
trEMBL	tr\|I1J805\|I1J805_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G34840.1}

Sequence

Transcript Sequence

>Glyur000339s00020802.1
GTTCNTCCTCATCCGAAAATTCCTTTCTCTTAATAATTGAGAGATTGGGTCACACTTATTGCTTAGTGCTAGGCTGCTAGCTACTAACCCATAGGAGTACCCACTACACACACACAGACACAAACTCTCTGTTTCTCACTTCTCAGTTAAGAGCTCTGTGAAGAAGAAGAAGAAGAANAAGAAAGCTTAAGCTTAATGCGAATTCTGGAATCTGGGTTTTGTTCAAGTTCATTTTTTTCACAATGGGTTGCATTTACTCTCGCGCATGCATCGGCAACACATGCGGCGGTTCAAGCATCAACGGCGACCCAATAGCTCGACCCAATGTTCTAGAACCTTCCCCAACTTCCTCAGAGCTTCGCGACGGCGAAATCAGGGACCAATTGAACCAATTGAGCTTAACACGAGACTCCGAAGCCGGAATCCGAAGACTCGCTAGGGTTTCCGCTCAGTTTCTTCCACCAGACGGTTCACGAATCGTGAAGGTTCCTTCAAACAACTACGAATTACGCTACTCGTTTTTGTCACAGCGTGGTTACTACCCCGATGCACTCGATAAAGCAAACCAAGACAGTTTCTGCATCCACACACCGTTTGGTAACAGTCCCAACGACCATTTTTTCGGTGTGTTCGATGGTCACGGCGAATTCGGAGCAGAGTGTTCGCAATTCGTGAAGCAAAAGTTGTGTGAGAATCTTTTGAGGAATCCCAAGTTTCGTGTTGATGCTGTTGAGGCTTGCCACGTGGCGTTTTTGGCGACAAACTCGCAGTTACATGATGATGCTGTTTTGGATGATAGCATGAGTGGTACGACGGCGATCACGGTGCTTGTTAGGGGTAAGACGGTGATCGTGGCGAATTCCGGCGACTCTAGGGCGGTGATAGCGGAGAGGAGAGAAAAGGGTGGTGGGGTTGTTGCCGTTGACTTGTCCGTTGACCAGACACCTTTTAGGGCTGATGAGCTTGAAAGGGTGAAGCTTTGTGGTGCTCGGGTTTTAACTTTAGATCAGATTGAAGGGTTGAAGAACCCTGATGTTCAGTGTTGGGGGAGTGAGGAAGGTGAAGATGATGGTGACCCTCCTAGGTTGTGGGTACCNAATGGGATGTACCCTGGTACTGCTTTTACAAGGAGCATTGGTGATTCCATTGCTGAGAGTATTGGNGTTGTTGCTAACCCTGAGATTGTTGTGTTTGAGTTGACACAGAATCACCCCTTTTTTGTGATTGCCAGTGATGGGGTCTTTGAGTTCCTCTCTAGCCAGACAGTGGTTGATATGGTTGCAAAATTCAAAGATCCACGGGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTTTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTCATCATTGTACATATAAATGGGCTAAATGAACCTGCTGTTGCTCAGTCAGCAAGTTATAATGACGTTTTAGGAACCCATGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCTCCTTCCACCTTTGGCTGGAATGCTAGGAACCATCGTGTAAGGCATGACTTATCAAGGGCACGGCTCAGAGCAATTGAAAATTCCCTGGAGAATGGACAAGTTTGGGTTCCTCCATCTTCAGCCCACAGAAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCATTGCATGATCATTTTCTCTTCCGAAAACTTACTGCTTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAAGTCCAACCTGGGGATATTATAGTCAAGCAGGGTGGCGAAGGGGACTGTTTTTATGTTGTTGGTAGNGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGATAGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGCTTTGGAGAACTTGCTCTGATGTACAACAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCGAACTTATCATCCGTGAAGTTGCTTCGGTCTGTAGATCTCCTCTCAAGATTGTCAATTTTACAACTGAGTCAGATTTCCGACTCCCTTTCTGAAGTTTCCTTCTCAAGTGGACAGACAATAATTGATAAAAATGAAGTCCATGCATTGTACATTATCCAAAAGGGACAAGTAAAAATAACTTTTGATGCTGCTTTATTGACAAGTCCAAATACCTACAGCCTCAAGCCTGACATCCAAAATGAGGATGAGGATGTACAGAACCAAAGAGAACTGTCAATAGAGAAGCCCGAGGGAAGCTACTTCGGTGAATGGGCCCTTCTTGGTGAACATATTGGTTCCTTAACNGCTGTTTCTGTGGGGGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCAGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTTGAGGGACAANTCCAAGGAATTGACTAGAAATTTTGAACTCTCATCTCTTGATAAAGTCCAGCTCTCAGACTTGGAGTGGAGAAAGACTTTATATTCCACTGACTGCTCTGAGGTTGGACTTGCAAATTTAAGAGACTCNGAAAATTTGCTTACTTTGAAGAAATTTTCTAAGCCAAAGGTGAAAAGGCTAGGAAAGGAATCACAAATCTTGAAAGAGAAAGATTTGATTAAGGGTATGAGCTCTTCAGCTTGTGTACCACAGGTTTTATGCACTTTTGCTGACCGCATATATGCTGGAATACTGCTAAATACATGTCTTGCCTGCCCTTTGTCTTCCATACTTTCAAGTTCTTTTAGTGAATCAGCAGCCCGGTTTTGCGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGCGTATCACCTNATGTTTTGATGTTTGATCAAATGGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTCTCTGATGAGAGAACATTCACAATTTGTGGGATGGCAGATTCGCTAGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCTGACTGGTGGGCGTTGGGAGTTTTGGTATATTTTATGTTACGGGGCGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACATTACTTGAGACANAGGAAAATAATAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCACTCATGGTTTAATGGTATTGACTGGGAAGGGATTAGAAACCACACCTCTCCTGTCCCCCCAGAAATTGTTTCTCGTATCACACAATACTTGGAACTTCATTCTGAGGATTGTGCTGTTTCTATGGGGTCCCCATTACAAGAGGTAGAAGAACTTAATGTACCTGAATGGCTTGAAGATTGGTAGAAGAATGAGCATTAAGCTTTTGTCTACTTTTTGTAAGTTTGTCTCTACACNACACCCAATATTTACCCTTTTGTTATTTATTTGGACAAATTGCAATTAAAGANTGCAATTGACCATAAAATGCAGAGAGAGCAATATAGATCCAGAATATTCCCCATAGTTCAATCTTTTAGTTGTTGAATGGGTAGGGTAGGTTTATTAATAAGTTTTTTTATCTCTTCACCTCTTCCCTT

Protein Sequence

>Glyur000339s00020802.1
MGCIYSRACIGNTCGGSSINGDPIARPNVLEPSPTSSELRDGEIRDQLNQLSLTRDSEAGIRRLARVSAQFLPPDGSRIVKVPSNNYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPNDHFFGVFDGHGEFGAECSQFVKQKLCENLLRNPKFRVDAVEACHVAFLATNSQLHDDAVLDDSMSGTTAITVLVRGKTVIVANSGDSRAVIAERREKGGGVVAVDLSVDQTPFRADELERVKLCGARVLTLDQIEGLKNPDVQCWGSEEGEDDGDPPRLWVPNGMYPGTAFTRSIGDSIAESIGVVANPEIVVFELTQNHPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPAVAQSASYNDVLGTHVPQVVEVTGSESPSTFGWNARNHRVRHDLSRARLRAIENSLENGQVWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTASQCHVLLDCMQRVEVQPGDIIVKQGGEGDCFYVVGXGEFEVLATQEEKDREVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSVKLLRSVDLLSRLSILQLSQISDSLSEVSFSSGQTIIDKNEVHALYIIQKGQVKITFDAALLTSPNTYSLKPDIQNEDEDVQNQRELSIEKPEGSYFGEWALLGEHIGSLTAVSVGDVVCALLTKDKFESVIGSLQKISQEDHKLRDXSKELTRNFELSSLDKVQLSDLEWRKTLYSTDCSEVGLANLRDSENLLTLKKFSKPKVKRLGKESQILKEKDLIKGMSSSACVPQVLCTFADRIYAGILLNTCLACPLSSILSSSFSESAARFCAASVVTALEDLHKNGVLYRGVSPXVLMFDQMGQIQLVDFRFGKKLSDERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLVYFMLRGEMPFGSWRENELDTLLETXENNRLGSQGPDSVKSHSWFNGIDWEGIRNHTSPVPPEIVSRITQYLELHSEDCAVSMGSPLQEVEELNVPEWLEDW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00339	49739	58293	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001932 regulation of protein phosphorylation

GO:0006468 protein phosphorylation

GO:0006470 protein dephosphorylation

cellular_component
GO:0005952 cAMP-dependent protein kinase complex

molecular_function

GO:0003824 catalytic activity

GO:0004672 protein kinase activity

GO:0004722 protein serine/threonine phosphatase activity

GO:0005524 ATP binding

GO:0008603 cAMP-dependent protein kinase regulator activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000339s00020802.1	PF00481.16	PP2C	113	363	3.20E-36
Glyur000339s00020802.1	PF00027.24	cNMP_binding	497	588	6.50E-18
Glyur000339s00020802.1	PF00027.24	cNMP_binding	623	729	3.00E-10
Glyur000339s00020802.1	PF00069.20	Pkinase	776	982	2.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.035
SRR1783600	control	20.260
SRR1783602	moderate drought stress	29.327
SRR1811619	moderate drought stress	29.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.626
DRR006520	Root Summer glycyrrhizin high producing strain	24.364
DRR006521	Root Winter glycyrrhizin high producing strain	13.691
DRR006522	Root Winter glycyrrhizin high producing strain	13.572
DRR006523	Root Summer glycyrrhizin low producing strain	31.323
DRR006524	Root Summer glycyrrhizin low producing strain	30.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.997
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.733

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.967
SRR2868004	Drought Stress (root)	39.900
SRR2967015	Control (root)	46.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.114
SRR9715740	Leaf	41.330
SRR9715741	Leaf	35.826
SRR9715739	Root	9.015
SRR9715742	Root	28.629
SRR9715743	Root	23.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.467
SRR8749028	MeJA induced 9h	19.868
SRR8749029	MeJA induced 9h	10.676
SRR8749030	Uninduced	8.998
SRR8749031	Uninduced	4.749
SRR8749032	Uninduced	5.193

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.899
SRR8400027	Control - Root	34.641