Gene detail information of Glyur000339s00020799.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19670.1 | 1.00E-94 | Exostosin family protein |
| NR | XP_006573464.1 | 0 | PREDICTED: probable glycosyltransferase At3g07620-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 5.00E-44 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|K7K3X1|K7K3X1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G34990.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00339 | 32983 | 36009 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000339s00020799.1 | PF03016.10 | Exostosin | 251 | 302 | 2.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.958 |
| SRR1783600 | control | 2.079 |
| SRR1783602 | moderate drought stress | 3.101 |
| SRR1811619 | moderate drought stress | 3.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.001 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.672 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.926 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.880 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.421 |
| SRR2868004 | Drought Stress (root) | 5.248 |
| SRR2967015 | Control (root) | 5.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.644 |
| SRR9715740 | Leaf | 8.512 |
| SRR9715741 | Leaf | 4.994 |
| SRR9715739 | Root | 1.260 |
| SRR9715742 | Root | 3.304 |
| SRR9715743 | Root | 2.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.506 |
| SRR8749028 | MeJA induced 9h | 3.147 |
| SRR8749029 | MeJA induced 9h | 1.485 |
| SRR8749030 | Uninduced | 0.961 |
| SRR8749031 | Uninduced | 0.339 |
| SRR8749032 | Uninduced | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.917 |
| SRR8400027 | Control - Root | 8.066 |