Gene detail

Gene detail information of Glyur000338s00015583

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20930.1	3.00E-120	6-phosphogluconate dehydrogenase family protein
NR	XP_004486468.1	0	PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform X1 [Cicer arietinum]
COG	YP_006380261.1	4.00E-79	3-hydroxyisobutyrate dehydrogenase [Advenella kashmirensis WT001]
Swissprot	tr\|Q9SUC0\|3HIDH_ARATH	1.00E-149	Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|K7MB43\|K7MB43_SOYBN	0	3-hydroxyisobutyrate dehydrogenase {ECO:0000256\|RuleBase:RU910714}

Sequence

Transcript Sequence

>Glyur000338s00015583.1
AAAAACCAAAATTGCAATTAAATCCTTTTATGATAATGAAAAAGGTAACATAAGAATTTGATCAACAAAAAAGAAACACAGAAGGGTGAGCAAAAGGAGAGAAAGGATAAGTATGGCGATTTGCAGGTTGAGATCTCTGCTTTCTGTTGCCAAATTCAATTCTCAAAGCTTCCAACTCCCATCACGCTCTTTCTCTTCGTCCCAAGTCCCCCCTCATCACTTGCAGAATGTTGGATTCATTGGACTTGGAAACATGGGATCCCGAATGGCAAATAATCTAATGAAAGCTGGATTCAGACTTACAGTTCATGACCTAAACTCTGATGTTCTTGAGAAGTTCTCTNAGATGGGAGTTCCCACAAAGAAAACACCTTATGAAGTTTCAGAAGCAAGTGATGTTGTAATCACAATGTTACCTTCTTCTGCCCATGTCATTGATGTTTACACTGGACCAAATGGTTTGCTTCATGGTGGAAAACTCCTAAGGCCATGGTTATTGATAGATTCNTCCACTATTGATCCACAAACATCGAGAAACCTTTCTGCTACAATATCTAATTATATTCTAAAAGAAAAGAAAGGTGATTGGGAAATCCCTGTCAAGTTGGATGCTCCTGTATCTGGAAGTGTGATTGCAGCAGAAGCTGGGACACTCACTTTTATGGTTGGTGGCTCTGAGGAAGCATTTCTTGCTGCAAAACCCTTATTCCTTTCAATGGGTAAAAGTGCAATATATTGTGGTGGAGCAGGGACTGGTTCGGCAGCAAAAATCTGCAATAACTTGGCTATGGCTGTGAGCATGCTGGGAATATCAGAAGCCCTTGCTCTGGGCCAATCTCTAGGTGTTGCTGCCAGCACCTTGACAAAGATATTTAACTGCTCCAGCGCTCGCTGTTGGAGTAGTGATGCTTACAACCCAGTTCCTGGGGTGATGGAAGGGGTGCCCTCTTCAAGGGATTATAATGGAGGGTTTGCATCCAAACTTATGGCTAAAGACTTGAACCTAGCAGTAGAATCAGCTAAGCTGGCTGGATGTAAATACCCACTAACATCGCACGCGCAAAAGATGAATGGACGAGCCTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	169971	175237	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00020	mmsB, HIBADH	EC:1.1.1.31	Valine, leucine and isoleucine degradation	map00280
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity

GO:0008442 3-hydroxyisobutyrate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015583.1	PF03446.10	NAD_binding_2	38	210	2.00E-38
Glyur000338s00015583.1	PF14833.1	NAD_binding_11	213	319	6.00E-27
Glyur000338s00015583.2	PF03446.10	NAD_binding_2	38	93	1.30E-11
Glyur000338s00015583.2	PF03446.10	NAD_binding_2	102	147	3.80E-12
Glyur000338s00015583.2	PF14833.1	NAD_binding_11	150	256	3.70E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.277
SRR1783600	control	4.435
SRR1783602	moderate drought stress	6.309
SRR1811619	moderate drought stress	5.804

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.299
DRR006520	Root Summer glycyrrhizin high producing strain	9.761
DRR006521	Root Winter glycyrrhizin high producing strain	13.151
DRR006522	Root Winter glycyrrhizin high producing strain	13.007
DRR006523	Root Summer glycyrrhizin low producing strain	10.063
DRR006524	Root Summer glycyrrhizin low producing strain	10.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.998
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.548

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.001
SRR2868004	Drought Stress (root)	21.514
SRR2967015	Control (root)	25.255

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.199
SRR9715740	Leaf	7.611
SRR9715741	Leaf	10.194
SRR9715739	Root	2.709
SRR9715742	Root	4.683
SRR9715743	Root	3.651

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.685
SRR8749028	MeJA induced 9h	7.498
SRR8749029	MeJA induced 9h	5.502
SRR8749030	Uninduced	14.165
SRR8749031	Uninduced	6.963
SRR8749032	Uninduced	10.744

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.407
SRR8400027	Control - Root	13.958