Gene detail

Gene detail information of Glyur000338s00015576.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30520.1	0	acyl-activating enzyme 14
NR	AES64781.2	0	2-succinylbenzoate-CoA ligase/peroxisomal protein [Medicago truncatula]
COG	YP_003277751.1	3.00E-59	long-chain-fatty-acid--CoA ligase [Comamonas testosteroni CNB-2]
Swissprot	tr\|Q8VYJ1\|MENE_ARATH	0	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal (Precursor)
trEMBL	tr\|G7IKV0\|G7IKV0_MEDTR	0	2-succinylbenzoate-CoA ligase/peroxisomal protein {ECO:0000313\|EMBL:AES64781.2}

Sequence

Transcript Sequence

>Glyur000338s00015576.1
ATGGCTCATATCTGCCAATGTCTGAGTCGATTGCTAACCTTCCGGCGACACTCTCCGGTGACGATCGCCGGAAACCGCCGCAAGACCGGGGAACAGTTGGTGGAGGAAGTGGTGTCTCTGGCACAAGGACTTCTCCGGCTAGGAGTCACACCCGGTGACGTGGTCGCCATCTCCGCTTACAACAGTGATTGGTATCTGGAGTGGTTATTAGCCATTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGATTGCAGTGAGGCCAGTGATGTTAGTGACTGATGAGAGCTTCTACCCATGGTACTTAAAACTCCAACAAGATGATATTCCATCTCTGAGGTGGCATGTTTTGTTGGATTCCCCATCTTCAGCTTTTACAAACAAGTGGAATGTGTTGACTCCAGGAATGCTTAAGAAGCATCCTNTAAAGCCTCTAGAATTTAATTACTCCTGGGCACCTGAAGGAGCTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCCAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCGTACAATCCCTAGCCAAGATTGCCATAGTCTATCTGCATACTGCTCCATTATGCCACATTGGTGGCTTGTCATCAGCCATGGCCATGTTTATGATTGGAGGTTGCCATGTATTGATGCCAAAGTTTGATGCAAAGTTAGCTGCTGGTGCCATAGAACAATATACCGTGACATCTCTTATCACAGTTCCAGCAATGATGGCCAGTCTGATTTCTGTTGTTAGGCACAAAGAAACCTGGAAAGGGGGAGAAACTGTCAAGAAAATACTTAATGGGGGAGGAAGCCTCTCACTTGAGCTCATCAAAGACACTAGCACATTCTTCCGTAATGCCAAGCTTATTTCAGCTTATGGGATGACAGAGGCATGCTCTTCATTGACATTCCTAACACTGTATGACCCAATGAACAAAACCACTAGACAGCACCGGCAGCCCCTTCAAACACATGGTGAGGCAGAAGGATCCAATCTCATTCACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCCCATGTAGAACTGAAGATATGTGCAGCAGTTGCCACTGGTCACACTGGGAGAATTTTAACTAGAGGACCANATGTGATGCTCAGGTATTGGGATCAAATTCTCACAAACCCATCGATTCAGGGGAATGAAGTCTGGCTTGACACAGGTGACATTGGATCCATTGATTCTCATGGTAATTTGTGGCTCCTTGGACGTACAAATGGTCGCATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTGGAGGCAATTCTACTAGAACATCCAGGGATTGCAAGTGTTGTTATTGTGGGAATCCCAGATGCTCGTCTGACAGAGATGGTAGCAGCATGTNTCCAACTGAGAGAAAATTGGCAATGGTCAGAGCACTCAGCTTCAAATGAAGGGTATCACCTATCAAGAAAGAATCTCTACCAATACTGTCTAGAAAATAATTTAAGCAGGTTTAAGATACCGAAGATATTTATTGAATGGAGGAAGGCTTTTCCACTCACTACCACGGGAAAAATAAGAAGGGACCAAGTCCGAAAGGAGGTTATGTCTCAGCTACAATCTTTGCATAGTAATCTTTGAATATATCATTAATCATCAAGGCCACAGTGTGCCCCTTAAAAACCAATGCATGCTCCAACATGTTTATGAATGTCCAAAAGAAAAAAATAAAAAGGCTGAATTAGGATTATACCACGACTAATATTGCAAGGATATGCTTCAGATGTGCAGTCTTGTACTACCAAGAAATGAAAGGTTTTGACTAGATGTGAGAAACTTGATCAATTTGTTGGGTTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	127979	133436	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14760	AAE14	EC:6.2.1.26	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015576.1	PF00501.23	AMP-binding	20	434	3.50E-69
Glyur000338s00015576.1	PF13193.1	AMP-binding_C	443	532	1.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.392
SRR1783600	control	0.375
SRR1783602	moderate drought stress	0.421
SRR1811619	moderate drought stress	0.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.344
DRR006520	Root Summer glycyrrhizin high producing strain	0.340
DRR006521	Root Winter glycyrrhizin high producing strain	0.117
DRR006522	Root Winter glycyrrhizin high producing strain	0.115
DRR006523	Root Summer glycyrrhizin low producing strain	0.197
DRR006524	Root Summer glycyrrhizin low producing strain	0.183
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.564

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.940
SRR2868004	Drought Stress (root)	3.829
SRR2967015	Control (root)	4.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.965
SRR9715740	Leaf	5.763
SRR9715741	Leaf	6.681
SRR9715739	Root	0.257
SRR9715742	Root	0.275
SRR9715743	Root	0.193

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.354
SRR8749028	MeJA induced 9h	3.179
SRR8749029	MeJA induced 9h	2.367
SRR8749030	Uninduced	9.514
SRR8749031	Uninduced	6.111
SRR8749032	Uninduced	6.181

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.535
SRR8400027	Control - Root	3.141