Gene detail

Gene detail information of Glyur000338s00015575

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21160.4	6.00E-140	Calcium-dependent ARF-type GTPase activating protein family
NR	XP_003594529.1	0	ZAC [Medicago truncatula]
Swissprot	tr\|Q9FVJ3\|AGD12_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD12
trEMBL	tr\|G7IKU9\|G7IKU9_MEDTR	0	ADP-ribosylation factor GTPase-activating protein AGD10 {ECO:0000313\|EMBL:AES64780.1}

Sequence

Transcript Sequence

>Glyur000338s00015575.1
TCCCAGGGATTTCAAACACAGCCATTTCGATTCCTTCTTCATTCACTGCTAAGGTTGTTTTGCTTGACTATTACTGTGGTTGCAAGCTGGATGGTTGTGGGCTTTGAGCATGTCAGTGAATAATTACCGAATGGATCTTGGAAGGCCAGCGTCAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAGAGTGATAATCGTTCTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGGGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGATTGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCCGAAGGATATACAAAACCCAGACCAGATGCCGGTCATGAGCAGCGTGCAAAGTTTATACGGTCAAAGTATGAGTTTCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTAGAATCAAGTTCCGCCAAAAGTTTTATGGATAGTTTTAAAAGTACTAGTAGTTCACAGAGAATGGAAGGTATGGTAGAATTCATTGGAATGTTGAAGGTGAANGTGATTAGAGGCACAAATTTAGCTATCAGAGATATAAAGACAAGTGACCCATATGTCGTTTTGAATCTTGGCCAACAGACTGTCCAGACAACTGTAGTTAGGAGTAACTTGAATCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCATTATGGACAGCTGAAATTGAAAGTATTTGATCATGACACATTTTCAGCTGATGATATAATGGGAGAAGCAGACATTGATCTCCAGTCACTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTGAAATCTGATGACAATGCACTTATTGAGGACAGTCCNGTCAATATTATTGATGGTAAGGTTAAACAAGATATGTCACTCAAGCTCCAGAATGTTGAATCTGGAGAAATAGATTTAGAACTCGAGTGGATTCCTCTTGAGCAATAGGTACTTGAGGGCTTTAGCCTTTTTCATTTTCTTGAAGAAATCCCTGTAATTTTTTCTCTNCTGCTTTTGCCTCATCATCCTAGAGGAATAAATTTGTCCGTCCTTTTGTGTTTTTATGTCTGATAANTTATTTGACCAAACATTCAGTATATTTTCTCCACAGTAAAGAATGAAAGAAAGACATAGCTTGCTTAGCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	119715	124820	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005096 GTPase activator activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015575.1	PF01412.13	ArfGap	19	133	2.00E-37
Glyur000338s00015575.1	PF00168.25	C2	176	254	8.70E-22
Glyur000338s00015575.2	PF01412.13	ArfGap	19	133	2.00E-37
Glyur000338s00015575.2	PF00168.25	C2	176	254	8.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.799
SRR1783600	control	7.160
SRR1783602	moderate drought stress	6.483
SRR1811619	moderate drought stress	6.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.730
DRR006520	Root Summer glycyrrhizin high producing strain	5.861
DRR006521	Root Winter glycyrrhizin high producing strain	6.413
DRR006522	Root Winter glycyrrhizin high producing strain	6.010
DRR006523	Root Summer glycyrrhizin low producing strain	7.352
DRR006524	Root Summer glycyrrhizin low producing strain	7.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.662
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.456

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.061
SRR2868004	Drought Stress (root)	26.028
SRR2967015	Control (root)	27.445

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.475
SRR9715740	Leaf	24.885
SRR9715741	Leaf	27.689
SRR9715739	Root	1.704
SRR9715742	Root	5.841
SRR9715743	Root	6.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.758
SRR8749028	MeJA induced 9h	15.760
SRR8749029	MeJA induced 9h	12.620
SRR8749030	Uninduced	21.532
SRR8749031	Uninduced	17.599
SRR8749032	Uninduced	15.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.057
SRR8400027	Control - Root	20.989