Gene detail

Gene detail information of Glyur000338s00015572

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05390.1	4.00E-152	root FNR 1
NR	XP_004486455.1	0	PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cicer arietinum]
COG	YP_001016957.1	2.00E-71	ferredoxin-NADP oxidoreductase (FNR) [Prochlorococcus marinus str. MIT 9303]
Swissprot	tr\|Q41014\|FENR2_PEA	0	Ferredoxin--NADP reductase, root isozyme, chloroplastic (Precursor)
trEMBL	tr\|V7BNA6\|V7BNA6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19479.1}

Sequence

Transcript Sequence

>Glyur000338s00015572.1
AAAAAAACTAGTCCTAGTTGAAGGCATAGGTTGGGGAGAGACAGAGGGAGTGACACTCCGAGGAGGCAATAAGGGAAAAACCCGACCTTTCCCATTCTCCAAAGGATCATCAAAGTAGCAGCAGTTTGTCACAAATTCAAGTTGTGTTGTGCCACCGCCACCTTATATTAATCAAAGTTCTCTGCTTTTATAACACCCCCTCCTTCTCCAATCACTCGTTGACCTGAGATTACTACACCTTCTCATATGATGGCTCATTTTGCTGTGTCTCAGATGGCTGTAACTGTTCCTGTTAGCAGTGATTTGTCCATCAGAAGATCTGCGTTTAAGGCATCTACCTTAAACTTTTGGGATAAATCATGGGGACCGGTATTTACTTTGAACTTGAAAGCAAACAACTCCAGTTCAAGGAATCATCCTGTGATATGCATGTCAGTGCAACAAGCAAGTGTGCCCAAAGTTGCCGTCTCCCCTTTAGAATTGGAAAATGCTACAGAACCTCCATTGAACTTATACAAGCCTAAAGAACCCTATACAGCAACAATTGTTTCTGTTGAGAGATTAGTGGGACCAAAGGCTCCTGGGGAAACTTGTCATATCGTGATTGATCATGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCACCGGGTGAAAATCCAAAAAAACCTGGGGCTCCCCATAATGTTCGACTATATTCAATTGCTTCCACGAGGTATGGAGACTCTTTTGATGGCAAAACAGCCAGCTTGTGTGTGCGTCGTGCTGTTTATTATGATCCTGAGACAGGAAAGGAAGATCCTTCCAAGAATGGCATCTGTAGCAACTTTCTAGGCTATCTCCGTCGAATGTTCATGGAATCAGTCCCCACATTCAAGTTTGGTGGACTGGCATGGCTGTTCCTTGGTGTTGCCAATGCTGATAGCCTTCTCTATGATGATGAATTCACCAAATACCTCAAGGATTTCCCTGACAACTTCCGGTTCGACCGAGCCCTTAGCAGAGAGCAAAAGAACAAGAAAGGGGGCAAGATGTATGTTCAGGACAAGATTGAGGAATACAGTGATGAAATCTTCAAGCTCTTGGACAATGGGGCCCACATTTACTTCTGTGGCCTGAAAGGGATGATGCCTGGGATCCAAGATACACTGAAAAGGGTTGCTGAGGAGAGGGGAGAAAGTTGGGAAGAGAAGCTCTCACAACTCAAGAAGAACAAACAGTGGCATGTTGAAGTCTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	111175	114152	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02641	petH	EC:1.18.1.2	Photosynthesis	map00195

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015572.1	PF00175.16	NAD_binding_1	200	303	3.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.313
SRR1783600	control	30.035
SRR1783602	moderate drought stress	32.538
SRR1811619	moderate drought stress	32.366

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.354
DRR006520	Root Summer glycyrrhizin high producing strain	36.535
DRR006521	Root Winter glycyrrhizin high producing strain	43.745
DRR006522	Root Winter glycyrrhizin high producing strain	42.314
DRR006523	Root Summer glycyrrhizin low producing strain	57.165
DRR006524	Root Summer glycyrrhizin low producing strain	56.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.938
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.374

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	131.431
SRR2868004	Drought Stress (root)	112.954
SRR2967015	Control (root)	133.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.239
SRR9715740	Leaf	36.233
SRR9715741	Leaf	44.533
SRR9715739	Root	28.529
SRR9715742	Root	47.879
SRR9715743	Root	48.877

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	138.519
SRR8749028	MeJA induced 9h	224.318
SRR8749029	MeJA induced 9h	121.976
SRR8749030	Uninduced	189.633
SRR8749031	Uninduced	178.942
SRR8749032	Uninduced	140.929

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.805
SRR8400027	Control - Root	81.432