Gene detail

Gene detail information of Glyur000338s00015562

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04885.1	0	Glycosyl hydrolase family protein
NR	XP_007147489.1	0	hypothetical protein PHAVU_006G128800g [Phaseolus vulgaris]
COG	YP_826247.1	8.00E-134	glycoside hydrolase family 3 protein [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	8.00E-28	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|V7BR40\|V7BR40_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19483.1}

Sequence

Transcript Sequence

>Glyur000338s00015562.1
GTTAACTTTTTGACATAGCATCTCATAAAGTCACCATTTTTGCTTTCCTCGTGAAGCAAGAGCTGGGAAAATCAAAATGTCTAGATCATTGGTTCGTTTGTTGGGTGTTTTGTGGCTGTGTTGGTTGTTGGCATTAACCGGAGAAGCTCAAGTAGAGTACCTGAAGTACAAGGATCCAAAGCAACCGGTTGCAACTCGGGTTAAGGACTTGCTGAGTCGAATGACTCTGGAGGAGAAGATTGGTCAAATGGTTCAAATTGATAGGAGTGTTGCCAATGACAAGGTTATGAAAACCAATTTCATTGGGAGTGTACTGAGTGGCGGTGGTAGTGAACCACTTCCAAAGGCTACTGCTCAAGATTGGGTTAATATGATAAATGAATTTCAGAAAGGGTCTCTGGCAAGTAGATTGGGCATTCCAATGATATACGGTATCGATGCCGTTCATGGACACAATAATGTATATAATGCTACCATATTTCCCCATAATGTTGGGCTTGGATGTACCAGGCAAGTTGAAGATCCTGACTTGGCACGAAGGATTGGTGCTGCAACTGCCCTTGAAGTCAGAGCTACAGGGATTCCTTATGTTTTTGCTCCATGCATTGCGGTCTGTAGAGATCCGAGATGGGGTCGCTGTTATGAAAGCTATAGTGAGGATCCTAAAATCGTGCAAGAAATGACAGAGATCATACCTGGTCTACAAGGAAATATCGCCGCCAATTCCAGGAAGGGATTTCCATATGTTGGTGACAAGACAAAGGTAGCAGCTTGTGCTAAGCACTTTGTTGGAGATGGTGGTACAACCAAGGGAGTAAATGAGAACAACACAGTGATTGACTGGCATGGATTGCTGAGCATTCACATGCCTGCATATTCTGATTCCATCATTAAGGGGGTCTCTACAGTAATGGTTTCATACTCCAGTTGGAATGGTGTAAAGATGCATGCAAATCGTGATCTAATCACTGGCTTCCTCAAGAATACCCTTAAGTTTAAGGGATTTGTCATCTCAGACTGGCAAGGTATTGACAGAATCACAACACCACCTGATTCGAACTACACATACTCTGTCCAGGCTTCCATTGAAGCCGGTGTTGATATGGTGATGGTCCCATTCAAATTCGAAGAGTTCATTCAGGATCTTACCCTCTTGGTCAAGAACAATGTCATTCCGATGGAGCGTATTGATGATGCCGTGGAGAGAATTTTGCTTGTAAAGTTCACCATGGGTCTTTTTGAGAATCCTCTAGCCGATTTTAGCTTAGTCAACGAGCTTGGAAGCCAGGAACACAGAGACCTAGCAAGGGAAGCTGTGAGAAAAACTCTCGTGCTGCTTAAGAATGGGAAAAATGATAGTGCTCCACTTCTTCCTCTTCCGAAGAAAGTCCCAAAACTCTTGGTTGCTGGCACTCATGCTGATAATTTGGGTTACCAATGTGGTGGGTGGACAATCAAATGGCAAGGATTCAATGGCAACACTGACACAAGGGGTNAGAGTGTAGAATGAACAACTATTCTCAATGCTATAAAGTCAACAGTTGATCCAAGCACACAAGTTGTCTTTAATGAGAACCCGGATAGTAATTTTGTCAAGTCCAACAACTTTGAATATGCCATTGTTGTTGTCGGTGAGCCTCCTTATGCCGAGACTGCTGGGGACAGCACGATGCTTACAATGACAGATCCTGGCCCAAGCACCATCAGCAATGTCTGTGGGACTATTAAGTGTGTAGTTGTCATCATTTCTGGCAGACCAATTGTGATCGAACCATATGTTTCCTCTATAGATGCATTGGTGGCAGCGTGGTTACCGGGCACTGAGGGACAAGGTGTGACAGATGTCCTTTTTGGTGACTATGGTTTCAGTGGTAAGCTTGCAAGGACATGGTTCAAATCTGTAGATCAACTCCCAATGAATGTTGGGGATCCTCACTATGATCCACTTTTTCCTTTCGATTTTGGACTGACAACCGAATCTGTCAAAGACTTAGTAGCAAGGTCAACCTCAGCTGCTGTTGGTGTAAGGGCTTGTCTATTTACCATTATGGTGACACTACTCATCAGCTTATATTTAACTGGTATGTTTGTGGTTGACCTCAGGCAAAATGAAGTTAAGAACCATTTGTGGGAGCTTATTGGAGCGGGCGGCTAGGGAACTAACTTGGGATACTTCCTATAGCTTAGTCTCATTTTAGCCTAATTCATTGTATTAGGACATTGTTATTGTTAATGAACTAGGACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	38282	44307	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05349	bglX	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015562.1	PF00933.16	Glyco_hydro_3	50	379	1.20E-86
Glyur000338s00015562.1	PF01915.17	Glyco_hydro_3_C	418	462	7.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.056
SRR1783600	control	3.161
SRR1783602	moderate drought stress	3.043
SRR1811619	moderate drought stress	3.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.924
DRR006520	Root Summer glycyrrhizin high producing strain	7.027
DRR006521	Root Winter glycyrrhizin high producing strain	2.332
DRR006522	Root Winter glycyrrhizin high producing strain	2.248
DRR006523	Root Summer glycyrrhizin low producing strain	9.234
DRR006524	Root Summer glycyrrhizin low producing strain	9.205
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.693
SRR2868004	Drought Stress (root)	17.053
SRR2967015	Control (root)	22.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.706
SRR9715740	Leaf	7.240
SRR9715741	Leaf	5.458
SRR9715739	Root	3.799
SRR9715742	Root	5.906
SRR9715743	Root	5.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.137
SRR8749028	MeJA induced 9h	10.780
SRR8749029	MeJA induced 9h	10.423
SRR8749030	Uninduced	3.321
SRR8749031	Uninduced	0.977
SRR8749032	Uninduced	1.908

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.865
SRR8400027	Control - Root	9.159