Gene detail

Gene detail information of Glyur000338s00015557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05410.1	9.00E-143	Transducin/WD40 repeat-like superfamily protein
NR	XP_007147493.1	0	hypothetical protein PHAVU_006G129100g [Phaseolus vulgaris]
COG	YP_001658838.1	4.00E-25	WD repeat-containing protein [Microcystis aeruginosa NIES-843]
Swissprot	tr\|O24076\|GBLP_MEDSA	2.00E-19	Guanine nucleotide-binding protein subunit beta-like protein
trEMBL	tr\|V7BNF5\|V7BNF5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19487.1}

Sequence

Transcript Sequence

>Glyur000338s00015557.1
CGAGCGACCGAGATACTAAACCCACGTTTCTCTTACACTGTTTTGTTAAACCCTAGCCAGCCAGCCAGCCATCTTCGTTAGCACCACCAAGCGAAGCAGCAACCTCACTCTCTCTCTCTCAGAAAACCCTAAACTACGCACTTCTCATTCTCTGCATCGCAAATTGTAACCACTTCAACCATGCCAAGCAGGAACCGTAAGAAGAAGGGCAGTGACCCCTTCTTCGGCGACGACGATTCCCCAAAACGCCGCAAAGTCAAGGACGACGATGAAGATGCCGAGATTGAAAGCGACTCCGACGAAGACGGCTTCTTCGCCGGCGAAGGTGACGAGGAGCTCGAAGAAGAGGAAACCGGTGCGGAAACCAGGAAGAGAATCGCAGAGGACTACTTGCAAATGGTGAGGGGAATCGCGCAGAAAGAGAAGGAACAACGAGAAGAAGAAGAAGGAGAAGACGAAGACGAAGACGAAGGAGAAGGAGCAAGGGATTCCCTCGTAGCTCAGAAATTGATAAAGGAGCAGCAAGAGGAGAGTGGACGCATCAGGAGAACCATTGCTTCGAGTGTTAAATTGAGTGGTGATGGTGGATTTGGGGTTTTGGTGAAGCACCGGCAATGTGTTACTGCGGTGGCTCTGTCTGAGGATGATTCGAAGGGCTTTTCGGCTTCCAAAGATGGAACAATCATGCAGTGGGATGTGGATAGTGGCAAATGTGAGAGGTATAGGTGGCCCAGTGATTCGGTGCTCAAGTCTCATGGCTTGAAGGATCCGCAGGGTTCTGCTACAAGGCAAAGTAAAAATGTCTTGGCCTTGGCTGTGAGTTCCGATGGTCGCTATTTGTCAACTGGGGGCCTCGATCGCCACGTTCACATATGGGATACCCGCACCAGGGAACATATTCAGGCTTTTCCTGGTCATAGAGGCCCTGTTTCTTGTCTGACTTTTAGGCAAGGAACTTCAGAGCTTTTTTCTGGTTCATTTGATCGAACAATTAAGATATGGAATGTTGAAGACAGAACTTACATGAACACTCTTTTTGGCCACCAAAGTGAAGTATTAAGTATTGATTGCTTACGCAAAGAAAGGGTACTAACAGCTGGACGTGATCGTTGTATGCAGTTGTTCAAGGTTCACGAAGAGTCGCGTCTTGTATTTCGCGCTCCTGCATCTTCCTTAGAATGCTGTTGTTTTGTTAATAATGAGGAATTTTTGTCTGGTTCGGATGATGGAAGCATTGAGCTTTGGAGTGTATTGCGAAAGAAGCCTGTTTACATTTTGAAGAATGCTCATGCTTTACTGACGGATAGCAAGAAATCTGACCAAGATAGTGAAAAACTCCCCAACGGTAACCTAGAAAATGGTTACCACCATCCCGAGAATCATCATTGTTTGTCAGTACACTCTTGGGTCAGTGCAGTCACTGTGTGTAGGAACAGTGACCTTGCTGCATCTGGGGCTGGAAATGGTTCTGTTCGACTATGGGCAATTGAAAGTGAGACCAAAGACATTAAATCTCTTTATGATNTACCGTTGGTTGGGTTTGTGAATTCTTTGGCTTTTGCAAAATCAGCACAATTCCTAGTTGCTGGAGTTGGGCAGGAACCTCGTCTAGGAAGGTGGGGACGAACCCCTGAAGCTCGGAATGGTGTTTCAATTCTTCCACTTAAGTTATGAAATGAGGCAATGAGTATTGTACCTCCTCAATTTTGACTAATATGAAATGCAACATTGAGTTGAAAGATGTCGCTGTCCGTGAGTTAATTAAATGTGTCAATTACATTTTTTTTATTATTATCATTATTTTACCTGATAATAGCTATCTTCTCAGTTTAGTNCCCAATTGTACAAGATTTTGAAATTCTGAAATGTGATTCCTACTTCTGGAAAGGCACTCGGCATACGCAGGGGACACGTGCTGAACTTATTTGGGTGAAAAAACTACTCGATTTCGGCCTCAACACATCTATAGGACGTGATTGGACCGGGTTTGTGTGCAGTCACCGATGTCGTGCAGTCATGCAATCAGCACGATCAGAACNGTCGAATCAAGATCAGACGGCTCACGATGTTAGTTCGTATTTTCAGCTCGGTTTATCCTCATCCGTTCGATCTAAATCGACGGTCTCGATTGCGATTGCATGACTATACTGAATCCAAATCCCTACTCTCCCCCCAAAAATAGTTGCGGTTGGTTTTGACAATGTTTTATTATTTTTTAGATATACCGTCGATTTTTAATATCATGATCCTATTTGAGCGCTCAAACGAGATTGTTTGTAGTAAACATGTTTCAAGGCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00338	11733	16128	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000338s00015557.1	PF00400.27	WD40	139	172	0.0038
Glyur000338s00015557.1	PF00400.27	WD40	206	233	0.00019
Glyur000338s00015557.1	PF00400.27	WD40	238	275	4.10E-09
Glyur000338s00015557.1	PF00400.27	WD40	323	356	0.00037
Glyur000338s00015557.1	PF00400.27	WD40	402	434	0.034

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.409
SRR1783600	control	17.497
SRR1783602	moderate drought stress	13.347
SRR1811619	moderate drought stress	13.158

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.462
DRR006520	Root Summer glycyrrhizin high producing strain	14.178
DRR006521	Root Winter glycyrrhizin high producing strain	7.266
DRR006522	Root Winter glycyrrhizin high producing strain	7.209
DRR006523	Root Summer glycyrrhizin low producing strain	13.759
DRR006524	Root Summer glycyrrhizin low producing strain	14.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.968
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.904
SRR2868004	Drought Stress (root)	10.346
SRR2967015	Control (root)	8.702

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.631
SRR9715740	Leaf	13.094
SRR9715741	Leaf	5.935
SRR9715739	Root	8.553
SRR9715742	Root	17.488
SRR9715743	Root	15.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.565
SRR8749028	MeJA induced 9h	12.304
SRR8749029	MeJA induced 9h	11.274
SRR8749030	Uninduced	1.617
SRR8749031	Uninduced	0.666
SRR8749032	Uninduced	2.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.540
SRR8400027	Control - Root	12.519