Gene detail

Gene detail information of Glyur000337s00026862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22870.1	0	Protein kinase family protein with ARM repeat domain
NR	AES87595.2	0	ARM repeat kinase family protein [Medicago truncatula]
COG	YP_003266816.1	3.00E-10	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q60DG4\|NEK4_ORYSJ	2.00E-11	Serine/threonine-protein kinase Nek4
trEMBL	tr\|G7JKS9\|G7JKS9_MEDTR	0	ARM repeat kinase family protein {ECO:0000313\|EMBL:AES87595.2}

Sequence

Transcript Sequence

>Glyur000337s00026862.1
GAAAAAGATGACTTGAAACACGGAGAAAGAAAAAAAAAACAGAGAGAGAAAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGATCGGGTCACAACAGTGCATGAATCTGAAGCAATCCATCTTCAATTCAAAGGTCTCTCTCACCTCTGCTCTACCGGCACCGCATCGCATCTGTATTGGGCATTAACAACGAACATCGCATAACTAAGAGGTAGAGAAGCAGCAGCGGAGAGAGAGAACAATTATTAAATCAAATCAAATCATTACAGAAACAGAAAATGTCGCTGAACATGAAAACCCTAACCCAAGCACTGGCGAAGACCGCAGCGGTGATCGAGAAGAAGGTGCAAACGACGGTACAAGAGGTGACAGGACCAAAGCCACTTCAGGACTACGAGATCCTCGACCAGATCGGCTCAGCTGGGCCGGGCCTGGCCTGGAGGCTTTACTCGGGCCGGGCCCGGGATCCGTCGAGGCTGCACCAGTACCCTGTCGTGTGCGTCTGGGTGTTGGACAAGCGGGCNCTCTCTGAGGCCCGAATGCGTGCTGGCCTCACCAAGGCCGCTGAGGACTCGTTCCTCGACTTGGTTCGGACCGATGCTGCCAAGCTCGTCCGGCTCCGGCACCCCGGCGTCGTCCACGTCGTTCAGGCCCTCGATGAGAGTAAGAACGCAATGGCTATGGTTACGGAACCCTTGTTTGCTTCCGTAGCTAATACTCTTGGCTATTTGGACAATGTTGCAAANGTTCCTAAAGACCTTAGGGGAATGGAAATGGGACTGTTGGAGGTGAAGCACGGTTTACTTCAGATAGCGGANTCATTGGACTTTCTCCACAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAATGTTTTTATAACCTTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAGTTTCTACTTCTCAGAACTCTGGTGACTCATCTAATCTGCAAGCCTTCCATTATGCTGAATATGATGTTGAAGACTCTATTTTGCCACTTCAGCCATCGCTAAATTACACTGCTCCTGAGCTGGTGAGGAGCACTGCGTCTTCAGCGGGGTGCTCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCTCGCAAGCCTTTGTTTGACTGCCGCAACAATGTGAAGATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGAACTGGTTCCTGACTTGCAAAGGATGCTTTCTTCAAATGAGTCTTTCAGGCCAACTGCGATGGATTTTACAGGCTCACAATTTTTTCGGAATGACACTAGGTTGCGTGCTCTGCGCTTCCTCGACCACATGCTTGAAAGAGATAACATACAGAAGTCAGAGTTCTTAAAAGCATTGTCAGANATGTGGAAAGATTTTGATTCCCGTGTATTGCGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGAAATGTGGTGATACAGCCGATGATTCTACCAATGGTTCTAACCATTGCGGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTCCCAGCCCTCGTCCCTGTCTTAAGTACTGCNTCTGGTGAGACACTACTACTACTTGTGAAGCATGCCGATCTTATAATAAACAAGACTAGTCAAGATCATTTAATTTCACATGTTCTTCCAATGATTGTTCGGGCCTATGATGATAATGATGCACGTTTACAAGAAGAGGTCCTGAAAAAATCTGTATCCCTTGCCAAGCAACTTGATGCCCAGCTGGTGAAACAAGTGATTTTGCCCCGTGTTCATGGACTGGCACTTAAAACAACAATTGCTGCGGTTAGAGTCAATGCTTTGCTGTGCCTNGGAGACATGGTTAACCGACTTGATAAACATGCTGTCTTGGACATCTTGCATACTATTCAGCGCTGTACTGCTGTTGACCGTTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGAGTAGAATTTGTTGCCGAACATGTTCTTCCATTGCTTATGCCCCTCCTGACTGCTCAACAACTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAGAAGATAGAAGAGAAGCGAGGAGTGGCTGTGACTAATTCCGGAATCCCAGAGGTAAAAATACCTCCTGCAGTCAATGGCCTTCAGANGGAAGCCCTGAGGACAAACAGCACCACTGTTGCCCCTGCAACAAAAAGCAGCACTTCTTGGGATGAAGATTGGGGTCCCAGAAAAACAGGAACTGCCTCTCCTGTCCAGAATTCTATNAATATATCCAGTCAATCTGTGACAGGCAACCCTGTGGGTCAAACTACATCTTTACAAAATCATTTGCCCTTATCTGGTCTGTCTAATCAGCAGACAACCAAGTCATGTCCCTCAGTAGATATAGAGTGGCCGCCCCGTGCATCTTCCGGTGTTACCTCACAATTTGGTGATTCTGAAAGGCATACAATTGCAGCAGGAACCTCATCCACATCTAATCTGGAAGNTCATGATCCTTTTGCTGATTGGCCTCCGCGTCCTAGTGGCTCATTATCTGGTGGATCTGGAAATCTCAGTAATGGTACTTTAGGAATGCCACTAAACAAATTAGGACTTAATNCAATGACTAGCAGCAATTCAAGCAATCTGGGTCTCCAAACTGGCAACAGTTGGTCTGTTAATTCTCAAAGTTCTGTGGAGCCCATCAGCTCAAACCTAAGGAATGCTAGTTCGGCCGTTGGTAGCCTGAATAGCGGTCTTGAACCTCAGAATTCTCTTGGGTTCCTAAAACAAAATCAAGGTTTTCCAGCGTNGAATGTTGTTTCATATAACAACGTTAAGTCAACTGATCTCGGATCGATATTTTCTTCCAACAAGAATGAACAGATTGCACCTAAACTCGCGCCACCTCCTACAACCACTGTGGGTAGAGGACGGGGAAGAGGGAGGGGAGCTTCNTCAACAACACAGCGCTCTCATACCAAGTCACACGCTGAGCAGCCACCCCTTTTGGATTTGTTGGGGTAGCTTGCTTCCATTATTGTTCTTGTATCAGGGTGGTGATGAGTTACTGCTGAGATTGTATATTATGCAAACATCCTATATGCTGAATGCTCGGAGACATTTATTGTGAAGGGAAGAGATTGCAGAAAACCTTGCCAGGCAACATCTGCTATAAGGGACGCTTACACTATGTAAAGGTTTTGTTGTATGTTGCTTAGTCTATAGTGGTATCTTGCAAAAATTTGGATTATTTTTTTATTTTTTTATTTTGTCGCGATATGTCACGGTTCATTCTTACTTAGGGCATCGGGCAAATTGTATTGAGAAAAGTCCTGATTACTGCAATTGGGTTGAAATTAATAAAAGCAGTGATTAAGTTTCTCCTGAAACGAGTGATTTGGATTCCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00337	153949	165675	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005488 binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000337s00026862.1	PF00069.20	Pkinase	107	344	1.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.658
SRR1783600	control	15.679
SRR1783602	moderate drought stress	15.192
SRR1811619	moderate drought stress	15.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.262
DRR006520	Root Summer glycyrrhizin high producing strain	16.868
DRR006521	Root Winter glycyrrhizin high producing strain	18.735
DRR006522	Root Winter glycyrrhizin high producing strain	18.359
DRR006523	Root Summer glycyrrhizin low producing strain	24.228
DRR006524	Root Summer glycyrrhizin low producing strain	24.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.960
SRR2868004	Drought Stress (root)	21.472
SRR2967015	Control (root)	21.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.505
SRR9715740	Leaf	10.672
SRR9715741	Leaf	15.937
SRR9715739	Root	6.879
SRR9715742	Root	22.571
SRR9715743	Root	21.027

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.321
SRR8749028	MeJA induced 9h	28.810
SRR8749029	MeJA induced 9h	27.139
SRR8749030	Uninduced	27.350
SRR8749031	Uninduced	49.409
SRR8749032	Uninduced	33.497

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.985
SRR8400027	Control - Root	20.433