Gene detail

Gene detail information of Glyur000337s00026847.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22420.1	1.00E-147	Peroxidase superfamily protein
NR	AFK40083.1	0	unknown [Lotus japonicus]
Swissprot	tr\|Q9SJZ2\|PER17_ARATH	0	Peroxidase 17 (Precursor)
trEMBL	tr\|I3SIJ1\|I3SIJ1_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40083.1}

Sequence

Transcript Sequence

>Glyur000337s00026847.1
CACAGTTCCAGTTCCGTGAATTTCAATTTTCAAAGTACTGCTGGTTTCGTGGCAAAATTTTAATGCTTTTGTACTTTTGTATTTTTCCAGTTCTCAACTCAAAGCAAAGGAATCCATGTCCCTGTCTCNTTCCCATTTTATTAATCTTCAAATATCTCAGAAATGTAGGAACATGGAAACAGCTATTGTGGAGATTGTTCAGCAGGAGTGGCGAGTATTGTTGGTATAGTTGCAAAAGGAGAATTTTGTGTTTTTAATGTAACTTATCCTTTTTCGACCAAAAAAAAAATGTAACTTATCCTCATTGCAAATTGTCTTGTGTCGCTTTTTTCCCCNCCATATAACCCAAGAGTTTACGTTTTAATGTCACTTTCTTTGCCCACTNCAAAATATCAAGCAGAACCAATGATTCAATGCCACATCAATCAATACATGGACATNCTCAGCATCTTCTATTAAATAATGTACTCACCAAAGGGAAAGTTACAAAACCTACAACATACCCTGGTCTACTTTGGTCTCCACTTTTAACACACACACACACACACACACTCAGTTCCAAATAAAGGGACCATTTTTGAGATACCCACAAACCAATTTCACCATGCTTCTCTTTCTGATCTTCCTCCTGCACATAACCTCGGTGACATCATCATCGGATCTCCGACCTGGGTTTTACTCAAAAACATGCCCAGAAGCTGAATTCATAGTCAGAGATGTCATGAAGAAGGCACTCATGAGGGAACCCAGAAGTGTTGCCTCTGTTATGCGCTTCCAATTCCATGACTGCTTCGTCAATGGTTGTGATGCTTCTATGTTGCTTGATGATACACCAACTATGCTTGGGGAAAAACTGGCCCTTTCAAATATAAACTCGCTTAGATCATTTGAAGTTATTGATGAAGTCAAAGAAGCCCTTGAGAAAGCGTGTCCCGGTGTTGTTTCCTGTGCTGATATCATAATCATGGCAGCTAGAGATGCTGTAGCACTGACAGGAGGACCAAACTGGGAGGTGAAGTTGGGAAGATTGGACAGCTTGACAGCTAGTCAAGAAGACTCAAGCAACATCATGCCTAGCCCAAGAGCCAATGCAACCTCTCTTATTGATCTCTTCAAGAAATATAACCTTACTGTGAAAGACCTTGTAGCTCTCTCAGGATCTCACTCTATTGGCCAAGCTCGTTGTTTCTCCATCATGTTCAGGCTATACAATCAATCTGGTAGTGGCAAACCCGACCCCGCCTTTGATCCCNAGTATAGAGAAGAGCTTGACAAGTTATGCCCACTAGATGTTGACCAAAATGTCACAGGGAACCTTGATTCCACTCCCCTTGTGTTTGATAACCAGTATTTCAAGGACTTGGTTGTTGGGAGGGGATTCCTCAACTCTGATGAGACACTTTTCACTTCCCNACANACAAGGGAGTTGGTGAGATTCTATAGTAGGCGTCAAGCTGAGTTTTTCAAAGCATTTGTGGAAGGGATGTTGAAAATGGGTGACTTGCAGTCCGGTCGGCCNGGGGAGGTTAGGAGGAATTGCAGAGTGGTCAATGCTCGCCCGGCTCATTTGCTGTCTGAATCTCATCAGAGTCAACACAACATGGAGAATAACAGTGAATCAATATAGAATGAATATATGTTTTGTGCCTGAAGACTCGTGNATTAATAAAGATGCTATGCAAATTTTCAATCTAAGAAACACATTTACAACAAAACANGCTGTAACGCATCATGGCTAATTTTAATATAGGAAGCATTTCGTGCCAATCCCAAAATATATGCAATTCTCCCAAAACATTTTAGTTATCATGCTCCCAAATACGTTTTTTTGAACATTCCAGGTTTCNAAATCTTTAAATTGTTGGATTGTTTTTGTGTTTAGCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00337	18324	22743	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000337s00026847.1	PF00141.18	peroxidase	36	281	1.40E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.489
SRR1783600	control	14.367
SRR1783602	moderate drought stress	13.358
SRR1811619	moderate drought stress	13.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.438
DRR006520	Root Summer glycyrrhizin high producing strain	22.750
DRR006521	Root Winter glycyrrhizin high producing strain	21.823
DRR006522	Root Winter glycyrrhizin high producing strain	21.797
DRR006523	Root Summer glycyrrhizin low producing strain	46.822
DRR006524	Root Summer glycyrrhizin low producing strain	46.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.632
SRR2868004	Drought Stress (root)	15.801
SRR2967015	Control (root)	27.559

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.366
SRR9715740	Leaf	28.053
SRR9715741	Leaf	22.709
SRR9715739	Root	6.383
SRR9715742	Root	11.310
SRR9715743	Root	9.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.260
SRR8749028	MeJA induced 9h	9.216
SRR8749029	MeJA induced 9h	8.214
SRR8749030	Uninduced	16.746
SRR8749031	Uninduced	5.824
SRR8749032	Uninduced	10.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.612
SRR8400027	Control - Root	13.271