Gene detail information of Glyur000336s00018110 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13830.2 | 2.00E-30 | DNAJ-like 20 |
| NR | XP_010246710.1 | 3.11E-48 | PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X1 [Nelumbo nucifera] |
| COG | YP_007104191.1 | 3.00E-13 | heat shock protein DnaJ domain-containing protein [Pseudanabaena sp. PCC 7367] |
| Swissprot | tr|Q9SDN0|DNJ20_ARATH | 5.00E-37 | Chaperone protein dnaJ 20, chloroplastic (Precursor) |
| trEMBL | tr|A5AR44|A5AR44_VITVI | 3.00E-46 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN64811.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00336 | 143309 | 148723 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000336s00018110.1 | PF00226.26 | DnaJ | 71 | 134 | 8.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.175 |
| SRR1783600 | control | 8.880 |
| SRR1783602 | moderate drought stress | 36.461 |
| SRR1811619 | moderate drought stress | 37.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.133 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.413 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.532 |
| SRR2868004 | Drought Stress (root) | 2.655 |
| SRR2967015 | Control (root) | 3.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.189 |
| SRR9715740 | Leaf | 0.121 |
| SRR9715741 | Leaf | 0.777 |
| SRR9715739 | Root | 1.125 |
| SRR9715742 | Root | 6.929 |
| SRR9715743 | Root | 4.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.550 |
| SRR8749028 | MeJA induced 9h | 3.639 |
| SRR8749029 | MeJA induced 9h | 2.429 |
| SRR8749030 | Uninduced | 2.551 |
| SRR8749031 | Uninduced | 2.313 |
| SRR8749032 | Uninduced | 5.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.773 |
| SRR8400027 | Control - Root | 3.038 |